AMCG00004961 (LOC107553256,LOC107677579,LOC107732202)


Basic Information

Item Value
gene id AMCG00004961
gene name LOC107553256,LOC107677579,LOC107732202
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11217636 ~ 11243426 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004961
CTTCTGTGCTGTCGCTCAACTGCTCGACTTCTCCGGGAGCTGGGAGACATCGGAGTTCACACAAGGAGACTTACAAATCGCCCCCCGaaataattaacaacaacaacaacaaccacaacaagaCGAGGTTGGGGGGGATGCAGATTGCGGGACATGCCGGATCAGGGGTTGTTTGTCCGGGTCCGTGAACATGAGGGCGCCTCAGATATGGACACACCATGTGTATGTGACTCGTAGGAGTGACAGCCCGGTGAGTGGCCTCCGCAAGCCTCCGCAAGCCACCAGCAGCACTGTGACCGCGAGCCTGTGAGCAGGTTCAGACAGCACTTGGCAGGGTGGAGCTTCCTGACAAATGGAGAATTACTTCCAGGCAGAAGCCTTTAACCTTGACAAGGTGCTGGATGAGTTTGAACAGAACGAAGatGAGACTGACACCCCCACTTTATCAGATGCAAAGTGGACTCAAATATTAGCCCCCCCACCTCACCTGCTTTCCCTGAATCCTGCCCTGGCCAGCCCAGGTGAGGACCTGTACCCCAGAGATACCCAGCTGAACTTCAAACCCCTCGCAGAGAGCCCAGCTGGTGGCGGAGGAGAAGGCGAGGGAGATCATTGTGTTAATGGGAGTGACGGAGACCAAACTGCAGAGACGAAGGCTCCTGTGTGTTTTGAGGAACATCGTGTGGAGAAGGACGATGCTCTCAACCAAAACGGGGACTCCAGCCTGTGTCCACGACCATCCCAGCAAAATGTAGGCAAACCTGTTGGTAGCAGCAATGGAAATCTTTCAGCTGTCACCTGTGAAAGACGGGCCTTGCTAAGTACAGACTTGGGGAACCAGCCCCCACTGTGTAGCAAGGAAAGCACAGGTCTAGAGAACGGTGGCCCAGCCATAGCGGATGTCAATGGTTGTGTGGAGGGTCTTATCTGTGATCCACCCCAGTTTGAGGTTGCCTCTTCTAATCGCAATAGGATTACAGAATTTAATTCGGATGCCTTCCAAGAACAGGACACTGTTCAGAAAGAAAGGGATCGGTCATTTTTCAAAGATTCTCACTTTTGTCTCGAGGAGGAAACAAAAAGGAACAGTGTTCTGCCAGCAAAAGACTATATGGTGAAAGGTCAGATAGACAGGATAGCTCCTCAGCTGTCTGGGTATGACAGCATGATTATTGGGTCACCAAAGGGAGATGAGGAGGACACAGGTGTTGCAGACAGGCCGTGCGCTCCTGGGTTTAAAGATGGAGTTGCAGAGACTGGCCTGCTTGAGCCTGAGGCACCTTCAGAGGAAGGGAGTCATGGCAATGGAGGATCTAATTCTCTGAGCAAATCGACAATGAGAAATGCTCACTCGGCCTCAGACACCAAAGTTTATTCCGAAGGGTCTCTAAATATCGGGTTTATGGCACAAAATGAATTGGAGGAAATCCAGCAACCAGGGGACGATGGCCAGCCTCAGGTGTCGTCTGCTGGGGAGCTGAGGAAGACTGAAGCGAGAGATGCCACAGGGCCATCTTTGCCACTGGTTGGAAAAAAGGGATATGAATGCACTTTTTCAGAAGTGTCTCCTTCCCAAGAGCCCTCCCTTCCCAATGGCTTGGATGTGGAAGACTTGGAGGGGGCAGAAGAAGGTAGATCTCCCCAGCCTCTGCCCTCCAAGGAGGACTCGGTGACCGAGGAGAAGGAGATGGAAGAGAGCAAGTCAGAGTGCTACGAGCAGGTGAGGGGTTTGGAGGCAGGCGTGTCGAACACTGGAATGACTCCAGCATCACAGAAACTGAACAACAGTGCCCTCCAGCCGGTCAGCATCCCTTACGGAGGCGCCCGGCCCAAGCAGCCCGTCAACCTGAAGCTGCAGATCCCGCGGCCACTCTCTGGTAAGGTGCAGAACGAGCTTGTGCAGCACAATAAGAACAAGAACTTGGAGCCGCAGGGCCACGCTGGCACGGGGGAGCTCCTGGCCTGTACGAATGGCTACAGTGAAGAAGCCACCGCGCCGGGTCTGAATGGAGAGAGCGGCGAAGCTTTTGATTCGGGGGCATCTCTCACCCCACCCGGCTTACTGTTGCCCCCAGAGAGCCCAGATAATGACCTTCAGGCCGGGCATCTGGGGGCGCTGACGAAAAAGCCATTCACTGCCCTGGGAGAGGTGGCCCCAGTGTGGGTTCCCGATTCTCAGGCACCCATCTGTATGAAATGTGAGGTCAAGTTCACCTTCACCAAGCGGAGACACCACTGCCGGGCCTGTGGGAAGGTATTCTGCGCAGCATGCTGTAGTCTGAAGTGTAGGCTGATGTACATGGACCGCAAAGAAGCCCGTGTGTGTGTCACCTGTCACTCAGTACTAATGAATGctcaaGCGTGGGAGACCATGGTGAGCGCCTGCAACCAGAGTCCCAACCCCAACAACCCTGCCGAGTACTGCTCCACCATCCCTCCGCTGCAGCAGGCCCAGGCCTCGGGGGCTCTCGGCTCCCCCCCTCCCACCGTCATGGTGCCTGTGGGGGTCCTGAAGCACCCTGGGACGGAAGGCTCGCTCCCCAGGGAACAGAGGAGGGTCTGGTTCGCCGATGGGATTCTGCCGAACGGAGAGGCAGCCGACTCGTCAAAGATGGCAGTAAGCGGGCCAGCCCCTGCGGGACCCCTGGCAGTGTCACATGATTCCTGTAAACCCCCAGCAGCCAATCCTGCTACCCCAGAGGCCGGATCTCTCTTGCCCGCCCAGGGGAGTGCGGCTCAGGTTGGCAGCCCCGTGGGCAGCTCTGTGAACCTGATCCCCGAAGATGGGCTCCCTCCCATTCTCATCTCCACCGGAGTCAAAGGAGACTACGCCGTGGAGGAGCGGCCCTCGGAGATCTCGGTGAtgcagcagctggaggagggCGGCCCTGACCCGCTGGTCTTTGTTCTCAACGCAAACTTGCTGGCCATGGTCAAACTGGTCAACTATGTGAACAGGAAGTGCTGGTGTGTGAGCACGAAGGGGATGCACGCGGTGGGGCAGGCCGAGGTGGTGATCCTGCTCCAGTGTCTCCCGGACGAGAAGAGCATCCCCAAGGACGTCTTCAGCCATTTCGTGCAGCTTTACCAGGACGCCCTCACAGGTAATGTGGTGAGCAACCTGGGCCACTCCTTCTTCACGCAGAGTTTCCTGGGCAGCAAGGAGCACGGCGGCTTCCTCTACATCAGCCCCACCTTCCAGTCCCTGCAGGACCTGCTGCTGCCCAACCCCCCCTACCTCTTCGGCATCCTCATCCAGAAGTGGGAGACGCCATGGGCAAAGGTCTTCCCCATTCGCCTCATGCTGCGGCTGGGAGCGGAGTACAGATTCTATCCCTGCCCCCTGTTCAGCGTGCGCTTCAGAAAGCCTCTGTTTGGGGAAACCGGCCACACCATCATGAATTTGCTGGCGGATTTCCGCAATTACCAGTACACCCTGCCGGTGGTCAATGGGCTAGTAGTTGACATGGAAGTGAGAAAGACCTGCATCAAGATTCCCAGCAACAGGTACAACGAGcTGATGAAGGCGATGAACAAGTCGAACGAGCACGTGCTGGCGATGGGGGCGTGCTTCAACGAGAGGGCCGACTCGCACCTGGTGTGTGTGCAGAACGATGACGGCAACTACCAGACCCAGGCCATCAGCATCCACAATCAACCCCGCAAAGTTACAGGGGCCTGTTTCTTCGTGTTCAGTGGAGCTCTGAAATCGTCCTCCGGGTACCTGGCGAAGTCCAGCATTGTGGAAGACGGCGTGATGGTGCAGATCACCGCCGAGACGATGGAGGCGCTGCGGCAGGCGCTGCGGGAGATGAAGGATTTCACCATCCCCTGCGGCAAGACAGACCAGGAGGACATCCAGGAGCATGTGCACCTGCAGTGGTTGGAGGACGACCGCAACTTCAACAAGGGGGTCATCAGCCCCATCGATGGCAAATCAATGGAGTCCATCACAAGCATCAAGATCTTCCATGGGTCAGAGTACAAAGCCAATGGGAAGGTCATCCGGTGGACAGAGGTGTTTTTCCTCCACACTGACGACCAGCCCAACGGACTGAGCGACCCAGCTGACCACAGCCGGCTGACTGAGAACGTGGCGCGGGCGTTCTGTGTGGCGCTGTGCCCGCACCTCAAACTGCTCAAGGAGGACGGCATGGCCAAACTGGGGCTGCGTGTCACCCTGGACTCGGACCAGGTGGGGTACCAGGCTGGCAGCAACGGGCAGCCCCTCCTGCCGCAGTACATGAACGACCTGGACAGTGCCCTGGTGCCCGTGATCCACGGCGGGGCCTGCCAGCTCAGCGAGGGGCCGGTGGTGATGGAGCTCATCTTCTACATCCTGGAGAACATCTCCTAGAGGAGGACGATACCTTGTGCAGGCCAGGGCACCCCGCGCTCCCCTCCCCGCTCCTGTCACCTCCAACTCGCCTACTCATTTGCACTTAAACAGAGCCTAAACGCTGTGCTGGAGGTCCTTCCTCCACACCTTCTATGCACCACATCCAACTTCTGTTCAGGCCAGggcagctgagagagaggaagcCGACAGACTGATCCAGCTTCAGCTTTCCTTCTGGAAGAAAATAATCAAGGCCTGCCTTACCAACCCAATGGGCTTCCATGTTTTAGCAGTGTCCcttggaatgttttttttttttaaatctttttccCAAAAACTCGAATTTGGGGACTCTTACGCTCCTGGCCAATGTGATGGCAGGGCACTGTTGATTAGTGTGGACTTGTTCCTGTGGCTCCATCCCTGGCATCCCTCTTCAAGAATATAGTCCTCTCTGGAGGGTCTAGGGAGCTCGAGGTTAAGTGACAGTCTTGCTCTTTGACAACTGGGACTTTCTCTCTTCCCAGAAATCATCTCCTTGGTTTGATACTTTATTTGCACTTGGTGCTCAGTGCCTGGGCTGTGATTCATACAGAAGACTCTTCTGGCTTCCAGCCTTGCCTCTTAGCTTTACTAAAGAAACCACGAGATGCTTTATTTCATAAACAAAGCTGGTTTGTTTTAGACGGTGGAGATCCTAATAAGTGTGTCTAGAATGTAGCCTTTCTTGATCTACAGATTAGGTTGTGTTATATGGACAGAGTGCGAAGGTGGCATTTTGTACCACCTTGCAAAAAGAGTAATTTGTAAAGCCATGGATTGTCAAAAGAGGGATCTTGGCTTCTCATCTTCACTGTTAGGTAGACTCTACGGTCCTGCTATATTGTGGCTGATACCTTCTAGAAACATTCATTGACCCAGAGTGAAAGGCTTCAGGCTTTACTCAAAGAAAGTCCCAGTTGTGAACGTATAGACTGGTTTGGCAAAAGGCAGTGCAGAGACTTGAGCACTTAGAGACCATTGTGAAGGAATCTAGTAGGTGCTGCGGACTGGATTATCATGATCCCGATCATCTTTAATACAACAGGACTGTCCGTCTCTGAAGGCGGGGGCTTTTGGGTTCATTTCATGATAAGTTCgcaattcattttatatttggggggaaaaaatgtcgACCAGGTAACTGGTTTCAGCACTTAACCTAGAAAGATGAGTGTGCAGACCGATCAAATCTTTTTTATGTGAGAATTCATAATCTGATCAAATCTATGGATCCTGAGCCattgaacaaaagaaaaaaataataataataatgtagaataAATGTGGAGTGAGTTTGCAAGGGAGTGCTGGGAGTGTGAAGGTGCCATCTGAACAGGGGTGTCTGCCCTCCCAGGTGACACAGGGTATTGCTcaagagaagaggagaaattCGGTCATGTGActttggttttcctttttcatgaCGTCCTCTACTTATCACCTTTCATTCAGTTATGGTGGTATTCGTGTCCTTGGTCATATATCATTTGGCTCATGCCTTTGATAAACCCGATTAAATGCAGTTCCAGACTCAACACTGAATTTTGGATCTGCgggtttcattttttgtatgcaCTGCTTTAATGGGCTGAGAGAGAGACGTTGGGATTCCTGGTGATGTACCTTAAAGTCATACTGCCAGCTTCTATACATTCTAGTCACCTCTGGATTGCGGTGTGGGTTAATGGCTGTTGTAGACAGAGATTGATTGTGGCTGACGTGATCATGGAGTGACCGTTACAAAACGTTTCAGACACTTGGCAGGACTGTAAGGGTGAGCAGGGTCTAAGCAGCATTTTTGTTGTACTGTGTGCGGAGCTTGTGCTGCAGAAGAAGGAATTCATTCTGTCTGGAAATATTTACCTTCACAGTGGGCTCTGTGGAGAATGACGAGGGGAAATGCGGTGCCCGTCGGACAGGAGCGCTACAGGAGCAGAGTGTTGCGTTGTTAGACCCCTGGGAGAATGACTGGATCGTGCTGGAGGATGGGGGATTGTTCTGGACCTCCTAGAATACACTACAAGAAAGTATTCAACACCTAATGATAGGCAAATTACTTTCTGGAAACAAGGGGCCCAGGGCGTCTCAATGCTGGAAAGAAACCTTTATGAGAGAGACTGTTTTCAAACTATCCCTCTTGCTTTGTCCTTTCAGTTACAAATAGTATTTATGAATgcttgatttatattttcattaacttGCATTGCCTTTTCCGTATGCGTGATGGCATTAATTGAGCTGTGGGATTCTCACCAGCGGGGGAGGGGTGATATTGGTCTTTATAAAATAAGCACCTCCTGTCTTCACAAGACAAACTGCTGATTTAAATACTGCTTTGGGACAGGAAGGTGGGAATCCCATTCGCTGAATTGTCTGCTTATGAGATAAAGATATTCAACACTCTAAGGAAGTCTAAATAGGCTAGGGTACAGTTTTTGTTCCCCCCCTCTTAAAACTTGTAGCAATTCAAAAGGGTTCCTTTGTACAAAATGACTATCAATTATTAGCCTAGCTGACTTAAAAGAAAAATTGCAACACTATGTTTTAAACACTGGCAacaaaaagggagaaaataaagaactgttacatgtatttaaaagccaaaaaaatgtacatcttttttttccttaatgTACACTACAAATATGTCAATAAGAACAGTCTTCTTTAATGAAAACTGTAGTATCTGTATAATAAAACTTATACAAAA

Function

NR:

description
PREDICTED: zinc finger FYVE domain-containing protein 9-like isoform X3

GO: NA

KEGG:

id description
K04679 MADHIP, SARA; MAD, mothers against decapentaplegic interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004961 True 7091 mRNA 0.52 19 11217636 11243426

Neighbor

gene id symbol gene type direction distance location
AMCG00004962 NA coding downstream 16636 11196475 ~ 11201000 (-)
AMCG00004949 mob3c,LOC106613547,LOC106574029,LOC108270829 coding downstream 54067 11151383 ~ 11163569 (-)
AMCG00004948 mknk1,LOC107602795 coding downstream 70438 11135735 ~ 11147198 (-)
AMCG00004947 NA coding downstream 112521 11104564 ~ 11105115 (-)
AMCG00004955 dmbx1,dmbx1a,LOC107588924,LOC107743378,LOC107700538,LOC107684938 coding downstream 191159 11023618 ~ 11026477 (-)
AMCG00004963 bt3l4,btf3l4,LOC107655993,LOC105028135,LOC103026176,LOC107562065 coding upstream 1185 11244611 ~ 11247754 (-)
AMCG00004960 NA coding upstream 11336 11254762 ~ 11262831 (-)
AMCG00004971 gipc2,dnajb4,LOC108430720 coding upstream 39200 11282626 ~ 11309243 (-)
AMCG00004973 NA coding upstream 85817 11329243 ~ 11339610 (-)
AMCG00004972 NA coding upstream 99906 11343332 ~ 11361553 (-)
G144502 NA non-coding downstream 259635 10956085 ~ 10958001 (-)
G144353 NA non-coding downstream 1279025 9937980 ~ 9938611 (-)
G144295 NA non-coding downstream 1466858 9744869 ~ 9750778 (-)
G144292 NA non-coding downstream 1517227 9699314 ~ 9700409 (-)
G144286 NA non-coding downstream 1533517 9683052 ~ 9684119 (-)
G144587 NA non-coding upstream 10189 11253615 ~ 11254574 (-)
G144612 fubp1 non-coding upstream 75700 11319126 ~ 11322006 (-)
G144614 NA non-coding upstream 79157 11322583 ~ 11328481 (-)
G144657 NA non-coding upstream 255746 11499172 ~ 11501075 (-)
G144659 NA non-coding upstream 262252 11505678 ~ 11506002 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 2311042 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 2369861 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 2840635 8353989 ~ 8377001 (-)
G143659 NA other downstream 5434452 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 7101222 4109082 ~ 4116414 (-)
AMCG00005011 best4,LOC103396708 other upstream 891952 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 1101245 12344671 ~ 12348328 (-)
G145046 NA other upstream 2092783 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 3720988 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 4259656 15503082 ~ 15535145 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016281 zfyve9a coding NC_007113.7 CM002886.2 19280829 ~ 19354622 (-)
grasscarp (Ctenopharyngodon idella) CI01000004_04438520_04452913 ZFYVE9, ZFYVE9A coding CI01000004 null 4437711 ~ 4452953 (-)