AMCG00004963 (bt3l4,btf3l4,LOC107655993,LOC105028135,LOC103026176,LOC107562065)


Basic Information

Item Value
gene id AMCG00004963
gene name bt3l4,btf3l4,LOC107655993,LOC105028135,LOC103026176,LOC107562065
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11244611 ~ 11247754 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004963
GGCGGGCTTCCGCGTCATGTGACCGACGACGCATGTTCTCCCTCGGATCCGCCATCTTGCCTCGCCGCgtgttgctgctgttgtctcTGCGTCGCTGTCGGGAGCGGGTTGCACGGAAGAACAGCTCGACTACCAGCCTGCAAACCTCGGGGACCGGAGCCAGGACAAAGGGAACAGCACGTAGGAAGAAGAAGGTTGTACACAGAACAGCAACCGCTGATGACAAAAAACTACAGAGTTCTCTAAAGAAACTGGCCGTGAACAACATTGCTGGCATCGAGGAGGTGAACATGATTAAAGATGACGGGACAGTGATTCACTTTAACAACCCTAAGGTGCAGGCCTCCCTGTCAGCCAACACCTTCGCCATCACCGGCCACGCAGAGACCAAGCAGCTCACAGAGATGCTCCCCGGCATCCTTAGTCAGCTGGGTGCAGACAGCCTGACTAGCCTCCGCAAACTTGCAGAGCAGTTCCCACGGCAAGTGCTTGACAACAAAGCACCAAAAGCAGAAGATATTGACGAAGAAGATGATGATGTCCCAGACCTTGTAGAGAACTTCGACGAGGCATCCAAGAATGAGGCAAACTGAGCCTCCACTGGGGAAGACGGGAGGCTCCACGCGTGGGGACTGCAATCAAAGAAGCAgcttgtttcagtgttttaactTTAGAAAAGGAAATTTATAATTTCAACATCGCAACAAACAAGagactttttttgtatttgtaacagGCTGCTGCAGGATCTTCCATGGAGACTGAATTTTGCACTTAACAGCAGCAAGGCTCCAAACTATTCccaactttttaaattgttttccgAATGGCCAGCGTTCTGGCTGTGGTTGCAGTGGTGGGAAAGAAAGCTAGTcttatttaagttttttgtttcttttttgtttctttctctttatgaaattcaaaataaaagattgaTTAACCTTT

Function

symbol description
btf3l4 Orthologous to human BTF3L4 (basic transcription factor 3 like 4).

NR:

description
PREDICTED: transcription factor BTF3 homolog 4-like

GO: NA

KEGG:

id description
K01527 EGD1, BTF3; nascent polypeptide-associated complex subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004963 True 948 mRNA 0.48 5 11244611 11247754

Neighbor

gene id symbol gene type direction distance location
AMCG00004961 LOC107553256,LOC107677579,LOC107732202 coding downstream 1185 11217636 ~ 11243426 (-)
AMCG00004962 NA coding downstream 43611 11196475 ~ 11201000 (-)
AMCG00004949 mob3c,LOC106613547,LOC106574029,LOC108270829 coding downstream 81042 11151383 ~ 11163569 (-)
AMCG00004948 mknk1,LOC107602795 coding downstream 97413 11135735 ~ 11147198 (-)
AMCG00004947 NA coding downstream 139496 11104564 ~ 11105115 (-)
AMCG00004960 NA coding upstream 7008 11254762 ~ 11262831 (-)
AMCG00004971 gipc2,dnajb4,LOC108430720 coding upstream 34872 11282626 ~ 11309243 (-)
AMCG00004973 NA coding upstream 81489 11329243 ~ 11339610 (-)
AMCG00004972 NA coding upstream 95578 11343332 ~ 11361553 (-)
AMCG00004997 NA coding upstream 165145 11412899 ~ 11438182 (-)
G144502 NA non-coding downstream 286610 10956085 ~ 10958001 (-)
G144353 NA non-coding downstream 1306000 9937980 ~ 9938611 (-)
G144295 NA non-coding downstream 1493833 9744869 ~ 9750778 (-)
G144292 NA non-coding downstream 1544202 9699314 ~ 9700409 (-)
G144286 NA non-coding downstream 1560492 9683052 ~ 9684119 (-)
G144587 NA non-coding upstream 5861 11253615 ~ 11254574 (-)
G144612 fubp1 non-coding upstream 71372 11319126 ~ 11322006 (-)
G144614 NA non-coding upstream 74829 11322583 ~ 11328481 (-)
G144657 NA non-coding upstream 251418 11499172 ~ 11501075 (-)
G144659 NA non-coding upstream 257924 11505678 ~ 11506002 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 2338017 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 2396836 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 2867610 8353989 ~ 8377001 (-)
G143659 NA other downstream 5461427 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 7128197 4109082 ~ 4116414 (-)
AMCG00005011 best4,LOC103396708 other upstream 887624 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 1096917 12344671 ~ 12348328 (-)
G145046 NA other upstream 2088455 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 3716660 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 4255328 15503082 ~ 15535145 (-)

Expression


Co-expression Network