AMCG00004965 (pigk)


Basic Information

Item Value
gene id AMCG00004965
gene name pigk
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11472530 ~ 11482233 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004965
ATGCTGGCGGACGATATGGCCTGTAATCACAGAAACCCCAAACCTGCTACTGTGTTCAGCCACAAAAACATGGAGCTCAATGTGTATGGGGATGATGTTGAAGTGGATTACAGAGGGTACAATGAGCTGCTGTTCATCATTGATACTTGCCAAGGTGCTTCCATGTACGAGCGCTTCTATTCTCCCAATGTAATGGCCCTGGCCAGCAGCCAAGTCGGAGAAGACTCCCTTTCACACCAGCCTGATCTCGCGATAGGAGTTCATCTGATGGACAGATACACCTTTTATCTCCTTGAGTTTTTGGAGGATATCCACCCTGCTAGTCAGGCCAATATGAACGACTTGTTTAAAGTGTGTCCAAGTAGCTTGTGCGTCTCCACGCCTGGCCACAGGACAGACCTCTTCCACAGAGACCCCAGCAGTGTCCTCATCACGGACTTCTTCGGCAGTGTTCGGAAAGTGGAGATCACGACGGAGGCCGTGGACCTGGTTCCCAACGTCacagagcaggaggaagagtaA

Function

symbol description
pigk Predicted to enable GPI-anchor transamidase activity. Acts upstream of or within detection of mechanical stimulus involved in sensory perception of touch and protein localization to cell surface. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of GPI-anchor transamidase complex. Orthologous to human PIGK (phosphatidylinositol glycan anchor biosynthesis class K).

NR:

description
PREDICTED: GPI-anchor transamidase

GO: NA

KEGG:

id description
K05290 PIGK; GPI-anchor transamidase subunit K

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004965 True 522 mRNA 0.51 4 11472530 11482233

Neighbor

gene id symbol gene type direction distance location
AMCG00004964 NA coding upstream 62188 11401533 ~ 11410342 (+)
AMCG00004969 LOC106596347 coding upstream 82917 11364432 ~ 11389613 (+)
AMCG00004968 fubp1 coding upstream 146867 11316701 ~ 11325663 (+)
AMCG00004970 NA coding upstream 158164 11309960 ~ 11314366 (+)
AMCG00004967 txndc12 coding upstream 219700 11248140 ~ 11252830 (+)
AMCG00004966 NA coding downstream 182613 11664846 ~ 11666101 (+)
AMCG00004976 NA coding downstream 200600 11682833 ~ 11716049 (+)
AMCG00004975 NA coding downstream 235089 11717322 ~ 11757176 (+)
AMCG00004974 slc44a5,LOC106613541,LOC106574020 coding downstream 277688 11759921 ~ 11782145 (+)
AMCG00004993 cryz coding downstream 356713 11838946 ~ 11840697 (+)
G144603 nexn non-coding upstream 141111 11329277 ~ 11331419 (+)
G144581 btf3l4,bt3l4,LOC107562065,LOC107655993,LOC104965512,LOC103026176 non-coding upstream 224722 11244602 ~ 11247808 (+)
G144549 NA non-coding upstream 272695 11198313 ~ 11199835 (+)
G144534 NA non-coding upstream 333187 11135757 ~ 11139343 (+)
G144512 NA non-coding upstream 474924 10996382 ~ 10997606 (+)
G144658 NA non-coding downstream 23449 11505682 ~ 11505883 (+)
G144668 NA non-coding downstream 88703 11570936 ~ 11577247 (+)
G144680 NA non-coding downstream 187242 11669475 ~ 11671442 (+)
G144681 NA non-coding downstream 189322 11671555 ~ 11672485 (+)
G144682 NA non-coding downstream 190639 11672872 ~ 11673515 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 1457106 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 1721753 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 3738471 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 3780169 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 3848460 7608901 ~ 7624070 (+)
G144677 NA other downstream 180448 11662681 ~ 11663368 (+)
G144940 NA other downstream 1298347 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 2672922 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 3897366 15379599 ~ 15384811 (+)
G145932 NA other downstream 6283024 17765257 ~ 17771525 (+)

Expression


Co-expression Network