AMCG00004967 (txndc12)



Basic Information


Item Value
gene id AMCG00004967
gene name txndc12
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11248140 ~ 11252830 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00004967
AGCGTCATTTCCTTCGTGAGGTCGGTTCCGGAGTGTACAATTACACCGGGATCCGGGGGGTTTGTGGTTTGGTTTGGCGAAACAGTGGAGACTGCAATTATCGTGATCTTAAGCTCTCCGGGAAGATGCAGATTCCGTTCATACATTTCACTTTGCTCTCCCTTTCCCCCTTTCTCTTCGGTTTTTATGTAGAGGTAACTGCAGAGGAAGGGCTGGGAAAAGGGTTTGGAGATAACATTCACTGGAGGAGTTTTGATGATGGCAAGAAAGAGGCAGAAGCCAgtGGGCTGCCCTTGATGGTTATCATCCATAAGTCGTGGTGTGGAGCCTGTAAAGCCCTGAAGCCCAAATTTGCGGAGTCTAAAGAGATATCCGAGCTGGCACACAACTTCGTCATGGTCAACCTTGAGGATGAAGAAGAGCCCAAAGACGAAGCCTTCAGCCCTGATGGAGGTTATATTCCCAGAATCCTCTTCCTTGATCCTTCTGGGAAAGTGCACCCCGAAATAACCAACAAAAACGGAAACCCCAACTACAAGTACTTCTACAGTAATGCTGACCAAGTTGTGTCTGGGATGAAGGAAGCTCAGGAGCTGCTGACGGGTGACGCGTTCCGACAGTCCCATGCGGCCGACGAGCTGTAACGGAGATGTGTGGGGGGGTTACAGTTGGGCAGATACAGCGAGGAGCCCTGCCTCACCACCTCCTGACCACTCTCCCAGGCCAGAGATCTTCACTCACTGCTGGAATACccagaaacagaacagaatttAAAGAGGATACcaatttgctaaattaaaatcTCCCTAAAGTCAGCTGAAGTGCTGACTTCTTTCCCCAGTCTATAAAACTACAATATATACCAACAATGTCTATGAAGAACCAAAGGAAACAGCCTACATTTGGCTTGTGTGAATGATCTATTTTACAACTATGGTTGAAtccttaattaatttgttttcaaaccatATTCCGGGTCGCAGTTAAAGAGAGAAGCCTCACTCTGGCGAGATAGCAAGGGCTCAGATTCTCATATTAGTTACAGGCATTGTTACTGCATTATACTTCCCCTTCTACACTAACAGTATCATTATTTTTGAGCACAGCCTAATATCTGAACactatatatattcttttttttttcttcttcatttgtaGTTTATAGGCATTTTGGTCAGTAAGAACACGACTGGTTTTAACATGAGTGGTGTCTCCCTCTGCCATTTTGAAATATGCTTTTGTCACTGCTCTTTGGGTACTTAAACAGGTATTTATATCACCATGTTTGGAGTTTTTTAAatctaacattttttattattggaaaCATCAGAGGGAAACTTGCATTACTGTCAATTGAGAAACCGTCCGTTATAGACCTTCTAGACACGCTAGATTAATaacttgattattttaattaaccccTGTCCTAACTGACTTTAAGATTGTCTTCCTTTCCCTTGCATGACTTACAGTGACACGTCACAGCATTGATAAGATCTTGTTATGAAGCAAAGACATTACAAATGTGCAGTACGGTGTTAAACCACAGCTCGCCATTCTTGTCAATAGACCATTTCTAAGAAAGGCGTTTTATAAGACCAGTTTATCAAGATTAGCATCACCACTACAGtgcatgtttttgttagtttctttTTGTAAAGGGGCTGCAAATGAActagattttttaaatggttatatATCGTgttgttgtgtctgtgtttaatgtATGAAAATAGCATTCGACCTTTGATTTATACCTGCATTACCAGACTGTGTTCTTGTTTCCAATTGGGGGGGATGGGAATAATCCCTGCAATGAAGGATGGTATTGCCatgctgtattgtatttttttttatacggcgcagtgtaaaataaagttttgacAAGAAA

Function


symbol description
txndc12 Enables protein-disulfide reductase (NAD(P)) activity. Acts upstream of or within DNA damage response, detection of DNA damage and detoxification of hydrogen peroxide. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including brain; digestive system; immune system; pectoral fin bud; and ventricular zone. Orthologous to human TXNDC12 (thioredoxin domain containing 12).

NR:

description
thioredoxin domain-containing protein 12 precursor

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process

KEGG:

id description
K05360 TXNDC12; protein-disulfide reductase (glutathione)

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00004967 True 1891 mRNA 0.42 7 11248140 11252830

Neighbor


gene id symbol gene type direction distance location
AMCG00004959 zfyve9 coding upstream 26559 11217192 ~ 11221581 (+)
AMCG00004958 NA coding upstream 33631 11201961 ~ 11214509 (+)
AMCG00004957 NA coding upstream 52713 11183257 ~ 11195427 (+)
AMCG00004950 NA coding upstream 238944 10999937 ~ 11009196 (+)
AMCG00004953 LOC107672656,LOC107393234 coding upstream 289357 10956236 ~ 10958783 (+)
AMCG00004970 NA coding downstream 57130 11309960 ~ 11314366 (+)
AMCG00004968 fubp1 coding downstream 63871 11316701 ~ 11325663 (+)
AMCG00004969 LOC106596347 coding downstream 111602 11364432 ~ 11389613 (+)
AMCG00004964 NA coding downstream 148703 11401533 ~ 11410342 (+)
AMCG00004965 pigk coding downstream 219700 11472530 ~ 11482233 (+)
G144581 btf3l4,bt3l4,LOC107562065,LOC107655993,LOC104965512,LOC103026176 non-coding upstream 332 11244602 ~ 11247808 (+)
G144549 NA non-coding upstream 48305 11198313 ~ 11199835 (+)
G144534 NA non-coding upstream 108797 11135757 ~ 11139343 (+)
G144512 NA non-coding upstream 250534 10996382 ~ 10997606 (+)
G144315 glul,gs01,LOC107083392,LOC107732203,LOC106584177,LOC108438877,LOC104941255,LOC108272186,LOC108437688,LOC105011759,LOC107733907,LOC106560331 non-coding upstream 1400384 9843429 ~ 9847756 (+)
G144603 nexn non-coding downstream 76447 11329277 ~ 11331419 (+)
G144658 NA non-coding downstream 252852 11505682 ~ 11505883 (+)
G144668 NA non-coding downstream 318106 11570936 ~ 11577247 (+)
G144680 NA non-coding downstream 416645 11669475 ~ 11671442 (+)
G144681 NA non-coding downstream 418725 11671555 ~ 11672485 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 1232716 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 1497363 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 3514081 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 3555779 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 3624070 7608901 ~ 7624070 (+)
G144677 NA other downstream 409851 11662681 ~ 11663368 (+)
G144940 NA other downstream 1527750 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 2902325 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 4126769 15379599 ~ 15384811 (+)
G145932 NA other downstream 6512427 17765257 ~ 17771525 (+)

Expression



Co-expression Network