AMCG00004969 (LOC106596347)


Basic Information

Item Value
gene id AMCG00004969
gene name LOC106596347
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11364432 ~ 11389613 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004969
CGGCGTGGAAGCGGAAGGAGCCGCCCGGGAGTGTCAGCCCAGTCACAGGAGCAGCCCAACCGGGAAGCGCAGCGCTGGCGGTGGCCGCCGTCGATCTCTGgaaataaaacacctttttattcaaaatgtaaaggaTACACAGAGCGCCGTTGATCTTCTTCACACGCAGTAAGGATTGTGACCCAGGGGCCCGTGTCGCCGGAGAGGAGGAAGCGTCTGTTCAGAGGAGGACGATGTCGCCGGGGGGAGTCAGCAGTGACTGTCCTCACCTGGAGTGTGTTGGTGAGATCACTAAAGAGGAACTGATCCAGAAATCCCATGATGGCTGCGCCTATGTGGGCTGTGGGGAGTCGCATGCTGACCACAGCACCGTCCACTCTCAGGTGCGTATCCTCTCACAGCCTTTGAAACGGAGGCCTATGCTGGACACGCGTCACAACCTGACGGTGAACTTGACCACCCTGCGTGTTTGGTGCTACGCCTGCGGGAAAGAGGTGTTTCTGGACAGGAAGTTGAGGCCTCGCTCCCCAGCCCCGTTGTCTAAGCCACACTCCCCcctgcacaacaacacacagGATGCGAAAGTCCCCGGGAGCCCGGCGCTGAAGATTCCCCAGGCAGCTGTCTGTGATGACCTAGATacagagatggaggaggaggatgagttCAGAACAAGAGCTCAGTGTTCACGAGCCCGCGGGACACAGGCCGTTCGAGAGACTCTGCGGTTCCACTGCGAAGCCGAGCTGGAATTGCCggattattataatgatgagtTGCACTGTGTTGCTGCTGAAAACGGGCATTCTGAACAGCTGGATCGGTGGGTGTTAATTGTGCCCGTGCAGAACAAGTTCAAAGCCAAGACGGACTCCCAGGAGTTCCTGCGCTGTCTGATGGACCAGCTGCATGAGGAGCTCAAGGAGCCCGTGGTGGAGCCCGACGACTCGTCCCCGCACCCGCTTGCCATGGACGACAACATGGAGGATGACAAGAGCCAGTCCGACAACGACTTCCAGTCCTGCGAGTCCTGCGGCAGCAGCGACAAGGCGGAGAGCGAGAGCAAGCCGGCGCCCGAGGAGCCCAGCGAGGTGGAGATGCTGATCGCTGACGAGGCGGGCGGCCCAGCGGGCGGCAAGGAGTGGCACAAGGACAAGAACCTCATCAACAAGCTGTACCGCAGCGGCTCCTGCGGGGACCTGGACAAGGACATCGACACGGCAGCCGAGACCACGCCCATCATCAGCAACCAGGGCACCGTCAAGGTCCAGATCCAGAGCAGGCTGTCAGACTGCTACCCAGACATCCATGTGAGCAGCTCCTCCCGGCCCCACAGCCCCACTCCCACAGACGCATTGAACTGCAAACTGTCCAGCAGTCCTCCTAAATCCACCTCCGCGTGGCCCGGCATGGCCTCCTCGCACAAGAAAGGAGTTACGTCGTTCTCCCAGCCAAAGAACAAGACTCAGAAGAAGTACCGCAGCGTGATCTCTGATGTGTTTGATGGCAAAATTGTCAGCTCTGTGCAGTGCCTGACCTGTGATCGGGTGTCGGTGACTTTGGAAACCTTCCAGGACATCTCCCTGCCCATCCCAGGCAAGGAGGACCTGGCCAAGCTGCACTCCTCCTCCCACCAGACCTCGCTGGTCAAGGCGGGCTCCTGTGGGGAGGCCTACGCCCCTCAGGGCTGGATCTCTTTTGTCATGGAGTACATCAAAAGCTGGTTTTGGGGTCCTGTGGTGACCCTTCAAGACTGCTTGGCTGCCTTTTTTGCAAGAGATGAACTGAAGGgaGACAACATGTACAGCTGTGAAAAGTGTAAAAAaTTACGAAATGGAGTGAAATTCTGCAAAGTACAGAGTCTTCCAGAGATTCTGTGCATTCACTTGAAGAGGTTCAGGCACGAGCTCATGTTCTCCACCAAAATTGGCACCCATGTGTCCTTCCCTCTGGAGGGGCTGGACCTGCAGTCGTTCCTGGCCAAAGACAGCACGGCACAGACCACCAGCTACGACCTGCTCTCCGTCATCTGCCACCATGGCACTGCCAGCAGTGGTCATTACATAGCGTACTGCAGGAACGATCTGAACAACTTGTGGTACGAGTTTGATGACCAGAGCGTCACTGAGGTGCCCGAGGCCACCGTCCAGAACGCAGAAGCATACGTGCTCTTTTACAAGAAGAGCAGCGAAGAGGCGCAGAAAGAGAGGCGGAGGGTGTCGTCTCTACTGAACATGATGGAGCCCAGTCTGCTGCGATTCTACATCTCCCGACAGTGGCTCAGCAAGTTCAAGTCCTTTGCCGAGCCCGGGCCCATTTCCAACAACGACTTCCTGTGTTCCCATGGAGgTGTGCCGCCACATAAAGCGTCCTATATCGAGGACCTTGTATTAATGCTTCCCCAAAACGTGTGGGACTATCTTTATAGCAGGTACACGGGAGGGCCAGCTGTGAACCATCTCTACGTGTGTCACACGTGCCAGACGGAAATCGAGAAGCtggagaagagaaggaagaCGGAGCTGGACATGTTTGTGCGGCTGAACAAAGCCTTCCAGGAAGAGGAAGCCCCTGCGGTCATTTACTGCATCAGCATGCAGTGGTTCAGAGAGTGGGAGGGCTTTGTCAAAGGCAAGGACAATGAGCCCCCTGGACCAACGGATAATACCAAGATTGCTGTGAACAAGAATGGGCATATTACACTAAAACAAGGAGCAGATTCGGGACAGATCTCGGAAGAAACCTGGAACTTTTTACACTCAATCTACGGGGGTGGCCCGGAGGTAGCTCTGCGCCCCAACATCGCGCCCCAAGAGTCTGAAGCATCTCAAGCAGAGGAGAAGATTGAAGTGGAGACCCGCACTGTCTAATTCCCATGCGACAAGCCAGAATAAACCCCTTTTTGCACTTGACTTTCTTGACAAAGCATTTGTGGAAGGACACTctaattttgttattatttaattttcttcttaaattatACGGGCATTGTTATTTTTGACAATCGACGGAAGGAATAAGTACATCACAGGagatgtattgtttgtatatatcATAACTTTATATTGCCGTAGAAGATCGTAGTTACTCTAACACCCTGGCTGTGTTGAAATTCGTGTACTGTGCTACTGTGCAGCAGACGAAACTGTCAgttgtgttcttttttaaaaccaaatagATACAGAAAACAGCCCTTGGATTTAACTCTTAATATATACTgcataaagtaaaaaaagatgCATACCCTAGTAGATGTTGTAGAAGTTAACCTcttacaaatattgttttagagAATGGTTAAATAACCAGAGagactaaaatgtaaaataaaataaaaagtaaaactcaTCAAGGGATACTAAGTACTTACTAAGTAGTCTCAGGAAAGAACTGTATTTTGCACTGTGTTGTAGACAAGGAAGCAGCATGCTCACACAATCCTGATGCCTGAAAGGTTTTGAATGTATAAAATCTAAAAGTACTTTTGTTGagtccttgttttgttttcatttaccCCAGAAGGGTTAAATGTAGCAAGCTGTTAATAAGCTTCTGTGGGAAAGTTTGACAACTTGACTACAATTTGGGAGGCATGCTTagaggaaacaaaatgcatacaaacaacGAAAAGGTGCATTTTAACAATATCCTACTTCCTGGACAAATTCTGTGTTGCATTCATTTGCATGTAAATGCAGCTCGCTTACTAAAAACCCGCGCACTTGAGCAAAACCGCAACTGCCAagtctgtgaaaatgtatgtacagaTACATAATAATTTATCCTGAACCAAGCATTTTTAACCGCTCTTTGAAGGAAAggcatttgtgtatgtatatgggCATGATGTTTCTTCTGTGTTACGAAGTGGGGATGTTAATGTGAATAATGCTCTATTGTAATGGGAAAATTCCACATGGAATGCTTCATAACACATAAATCCAGTATGTTCTCTCTTTGGCTGATACTATTGTAACCTTTAAACAAAACCTGAAGAAAAGatcttcaataaaaaaaaaagtgtgatcAAACTACTTAAGctgtataattaattttatagaCAAGTTATAGTCCTAACAAACACAGTACTTTGTAAGAGATGTGTTCACTTCTCTGCTGTAAAAATTGGCTTTCTGAAGCTTTCTGTTTATATAAGCTGGTGGGGTGtataaaatacaactatatttttacaggaaaagaagaatggtcaaggACACAGCCCCAGCTATATATAATCTACTTTGCCAATGCCATGACTCATGATGACACAAGAATGTCTTATCTGTGGGCTGCATTAGAACTAAAGTTGGTGTCTTTCCTTTCATTATTTGTTGTGTACACTacatgaaagttttttttttt

Function

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 33-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0046872 metal ion binding molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K11848 USP20_33; ubiquitin carboxyl-terminal hydrolase 20/33

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004969 True 4362 mRNA 0.49 21 11364432 11389613

Neighbor

gene id symbol gene type direction distance location
AMCG00004968 fubp1 coding upstream 38769 11316701 ~ 11325663 (+)
AMCG00004970 NA coding upstream 50066 11309960 ~ 11314366 (+)
AMCG00004967 txndc12 coding upstream 111602 11248140 ~ 11252830 (+)
AMCG00004959 zfyve9 coding upstream 142851 11217192 ~ 11221581 (+)
AMCG00004958 NA coding upstream 149923 11201961 ~ 11214509 (+)
AMCG00004964 NA coding downstream 11920 11401533 ~ 11410342 (+)
AMCG00004965 pigk coding downstream 82917 11472530 ~ 11482233 (+)
AMCG00004966 NA coding downstream 275233 11664846 ~ 11666101 (+)
AMCG00004976 NA coding downstream 293220 11682833 ~ 11716049 (+)
AMCG00004975 NA coding downstream 327709 11717322 ~ 11757176 (+)
G144603 nexn non-coding upstream 33013 11329277 ~ 11331419 (+)
G144581 btf3l4,bt3l4,LOC107562065,LOC107655993,LOC104965512,LOC103026176 non-coding upstream 116624 11244602 ~ 11247808 (+)
G144549 NA non-coding upstream 164597 11198313 ~ 11199835 (+)
G144534 NA non-coding upstream 225089 11135757 ~ 11139343 (+)
G144512 NA non-coding upstream 366826 10996382 ~ 10997606 (+)
G144658 NA non-coding downstream 116069 11505682 ~ 11505883 (+)
G144668 NA non-coding downstream 181323 11570936 ~ 11577247 (+)
G144680 NA non-coding downstream 279862 11669475 ~ 11671442 (+)
G144681 NA non-coding downstream 281942 11671555 ~ 11672485 (+)
G144682 NA non-coding downstream 283259 11672872 ~ 11673515 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 1349008 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 1613655 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 3630373 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 3672071 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 3740362 7608901 ~ 7624070 (+)
G144677 NA other downstream 273068 11662681 ~ 11663368 (+)
G144940 NA other downstream 1390967 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 2765542 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 3989986 15379599 ~ 15384811 (+)
G145932 NA other downstream 6375644 17765257 ~ 17771525 (+)

Expression


Co-expression Network