AMCG00004970


Basic Information

Item Value
gene id AMCG00004970
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11309960 ~ 11314366 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004970
ATGGATCAGTTCCGCGGCCTGTTCCTTAAACTAGACAAGAATAAGGATGGGTTTATTGCCGTGGAGGAGCTGCACAAAGAAATGACGAGAATCGGAGTTTTATCCGCAAATGAGAAAGCTCAGTCCATAGTAACCAGCTATGACCGAAATGACGATGGCCGTCTAGATTATGACGAATTCTTGGTTTACATGATGGACAGAGAAAAGAAGTGGAAACTAAACTTTCAGATCCTTGACAAAAATAACTGCGGCTTCATTGACCAGGAAGAgatcatacatttgtttaaggAGTTAGGAGTGGTCATTTCAAAGCcacatgcaaagaaaataatacaaatGATGGATAATGACAACTCCATGACAGTGGACTGGAGCGAGTTTCTGCAGCACATAATTCTGAATCCGGCTGAGGACATAGGAGAGCTGGTTTCTTCATGGAAACGCTGCATGGTATTTGACGTTGGTGAAAGTCGATCTATGCCAATGGAGTTTACACAGGAAGAGACTGACTCCGGAGCCTGGAAGTATATTTTAGCTGGAGGGCTATCAGATGCCGTGTCCAGGACTGTCACTGCACCCATTGATCGATTGAAAACTCAACTTCAAGTGTATGGTTCCAGTGCACAGGGGTTCAGAGGGATGAGAGCTGGTGGTATCAAGTCTATGTGGCAGGGGAATATAGCGAATGTGTTGAAGGGAACTCCACAGTCAACTCTCCAGTACGTCATATATACTCAGATGAAGCATCTTGGTAGTGTCTCAGAAGACAAATTGACTATCCAACAAAGGTTTGGACTTGGCTGTGTATCCGGCGCAGCGGCACACGCTGTGTTTTATCCCTTAGAGGTTATAAAAGTCAGCCTGAATCTTCAACCGGCTGGTACATACACAGGCCTTGTGGGGTGTGCAAAATCCATTTACCAACACGAATCAATAGCTGCCTTTTATAGAGGTTTTAAGCCGAGCGTAATGTGCATGATACCCTATGCAGGCGTGGAGTGTGCAGTTTATCATTCCATTATGAACTGGGCAAAAGCAGATCCAGCCAACAGCAGTGACTCAAAACTGTTCTGCTATAGCTTCGTTGCATTTGCTTCTGGACAGACTGCAAGTTACCCTTTGGCAGTGATCAGAACTCAGCAACAAGCTCAGGctattacaaaaacacagtacagtacctTTGAAGCACTTAAACTCAGCTATGTGAATCATGGGATTAGAGGATTTTACAGTGGAATGGGCGCCAGTTTCGCGAGAGCATTTCCTTGTGCCATTATAAACTATACCTTAGCATCCAAACTGgaagttttgttttccctttcatGA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004970 True 1326 mRNA 0.44 10 11309960 11314366

Neighbor

gene id symbol gene type direction distance location
AMCG00004967 txndc12 coding upstream 57130 11248140 ~ 11252830 (+)
AMCG00004959 zfyve9 coding upstream 88379 11217192 ~ 11221581 (+)
AMCG00004958 NA coding upstream 95451 11201961 ~ 11214509 (+)
AMCG00004957 NA coding upstream 114533 11183257 ~ 11195427 (+)
AMCG00004950 NA coding upstream 300764 10999937 ~ 11009196 (+)
AMCG00004968 fubp1 coding downstream 2335 11316701 ~ 11325663 (+)
AMCG00004969 LOC106596347 coding downstream 50066 11364432 ~ 11389613 (+)
AMCG00004964 NA coding downstream 87167 11401533 ~ 11410342 (+)
AMCG00004965 pigk coding downstream 158164 11472530 ~ 11482233 (+)
AMCG00004966 NA coding downstream 350480 11664846 ~ 11666101 (+)
G144581 btf3l4,bt3l4,LOC107562065,LOC107655993,LOC104965512,LOC103026176 non-coding upstream 62152 11244602 ~ 11247808 (+)
G144549 NA non-coding upstream 110125 11198313 ~ 11199835 (+)
G144534 NA non-coding upstream 170617 11135757 ~ 11139343 (+)
G144512 NA non-coding upstream 312354 10996382 ~ 10997606 (+)
G144315 glul,gs01,LOC107083392,LOC107732203,LOC106584177,LOC108438877,LOC104941255,LOC108272186,LOC108437688,LOC105011759,LOC107733907,LOC106560331 non-coding upstream 1462204 9843429 ~ 9847756 (+)
G144603 nexn non-coding downstream 14911 11329277 ~ 11331419 (+)
G144658 NA non-coding downstream 191316 11505682 ~ 11505883 (+)
G144668 NA non-coding downstream 256570 11570936 ~ 11577247 (+)
G144680 NA non-coding downstream 355109 11669475 ~ 11671442 (+)
G144681 NA non-coding downstream 357189 11671555 ~ 11672485 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 1294536 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 1559183 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 3575901 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 3617599 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 3685890 7608901 ~ 7624070 (+)
G144677 NA other downstream 348315 11662681 ~ 11663368 (+)
G144940 NA other downstream 1466214 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 2840789 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 4065233 15379599 ~ 15384811 (+)
G145932 NA other downstream 6450891 17765257 ~ 17771525 (+)

Expression


Co-expression Network