AMCG00004971 (gipc2,dnajb4,LOC108430720)


Basic Information

Item Value
gene id AMCG00004971
gene name gipc2,dnajb4,LOC108430720
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11282626 ~ 11309243 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004971
GAAACAATCTAATtgttataaaatgaaaaggcaatGTTGTATTTCACAGGAAGGTTGTGCTCTGGTCAATCTGCAGTCAGAATCTGGACCAAAAGGAAGTGACTGCCATTGCTTAATAGCCAATCTGATTTCCAATTGGCTTCTCATGGATCAGCCCTGCTCCCCTAggccaaacacattttttacttCAAGTAGCCCACAATGCCCATTGGTACTGCTGGACTAATGATCCCAACCCTTGGGGGACTTTACTCTGATTAGCTGAAATCCCAAATTGCCTTTGTTTATCAAAATCTCTTCTGGTGAGTGCATGTATCATGAATGAGTTAAATAAgttcatgttaaatatatatgccTTATTATGTTACTATGGAAGGGTCACCCGTTATGAACATGATCAGGGCAATGGCCTTTACAACGGTGGAAAAAACGACATATGAGTGGAAGATGGAATGGAGATTTTGAAATAATAGCCTATTTTATGATATGATACATACTTGAATTCTATTTCATTCGATTCAATTCAAACGTTTATGAATATTCCCAAAACACTTGCAAATCTCCAAATCAAACCATAAAACAGTCACCCAGTGGTGCTATAGAATGGAAACACTGGGACTTTGTATGTGAAGAAGAGGTCAGCTGTATTTATATGGGAAATGACGTGTTTCAGTACCAACTTTCTAGAAAGAGCTGCTGGATTCCAGTGGCACCAGCACAGGGCGGGCGATGGCTATTTAAAGGTGGCAGCAGAGGGGAAACACAAGGACTGAAGTGTGGAGCCACGCTTTACTCTCCCCACATGAAAGAGCTGTCATCCTTATACCACCCATAGGTGTTATATAAAAGAGCAGTCATCCCTGTCTATAAGAGCCGCGTTTCCCTGTCGCCGGGTGCATTACTGTGGAGGCGAAACAGATCTGCCTGCATACGGGCTCCCGGTAGCGCACGAAAATGGGGAAGGATTACTACAAAATACTGGGAATACAGAAAGGAGCAGCGGACGAAGACATCAAGAAAGCATACAGAAAGCAGGCTCTGAAATGGCACCCAGATAAAAACAAGAGTGCCAATGCAGAAGATAAATTTAAGGAAATCGCAGAGGCATACGAAGTTCTCAGCGACcccaaaaagagagagatttacGACCAATTCGGAGAAGAAGGTCTTAAAGGAGGGGCAGGAGGTTGTGACGGGCAGGGAGGGAATTACACCTACACATTCCATGGAGACCCCCATGCTACATTCGccgccttttttggaggctccaaTCCCTTCGAAATGTTCTTTGGGAGGAAGGCGGCCAACGGGCGGGATGAGGAGGATATGGAGGTGGACTCAGATCCCTTCGGTTCCTTCAGCAGCTTCAACCTGAACGGCTTCCCGCGGGACAGACACATGGGGTTGGGGCAGGTCAGACGCAAGCAGGACCCCGCCATCCATCATGAGCTGAGGGTGTCCCTGGAGGAGATCTTCAATGGCTGCACCAAGAGGATGAAGATCTCCAGGAAGAGGCTGAACCCTGATGGCAGGTAAAGGAGTTTCGGTATCAAGCGATAGCTCCTCAACACCCGGGCTTCCTCCTCCCACTGCGCCTGCGCTCGCACAATGTGGCAGCAGCGTCGCTATTGTTCAGCCCCACTCCAGCCTATGCGGGACCACTTTTGAGCAGAGGGCGCAACCGCGGTGCAACTTCTCCATTGGCTGCCCTACCTGTTGCACACCGAGGACGGGCGAGAGTGCCAGCCGCTGCTGAAGAACAAAGTCTGGGCAGGAAAGGAGACGCACTTTCACAGGTGGACCGGCGGGTTAGCTGGCAAGGACGGGCAAATCCCTGTTGGCGTGCGTCAAACGAGAGCGCACTTTGCAtttgctgggggggggggaagagaggagagagatgccCCTGGGGttaaggaagaagaaaaacaagtcgAGGGAGAGCTCGCACTTGGTGGAGAATGAGGAGACGGCAGGGTTGGCGGGGGGCAGCGAGAATAAGACGGCGGTCAATGGAGCCGGGCTGCCCCCTCCGCCTGCCAACCTGCGGCCCAAGCTGGTCTTCCACACGCAGCTCGCCCATGGCAGCCCCACCGGCAGGATCGAGGGCTTCACCAACGTCAAGGAGCTCTATGGGAAGATAGCCAGCGCCTTCAACCTCAGTGCAGCAGAGATCCTGTTCTGTACACTAAACACTCACAGGATTGACATGGACAAGCTCTTGGGAGGACAGATAGGCCTGGAAGACTTCATATTTGCCCACATAAAAGGAATAAAGAAAGAGGTGGAGGTCTTCAAAGCAGAAGAAGCCTTGGGGCTCACCATCACAGACAATGGGGCCGGATACGCTTTCATAAAGCGCATAAAGGAAGGCAGTGTGGCTGACGGCGTTAAAGTTATCTGTGTTGGGGACCACATAGAGTGTATCAATGGACAAAACATCGTGGGCACCAGACACTACGAGGTGGCCAGAATGCTGAAGGAACTGCCAAAAGGAAAGACCTTCACCCTCAAGCTAGTGGAACCAATGAAAGCATTTGAAATGATTGAACCAAGATCCAAAGGCGCAAAGCCTGGcgcagaaaacaaaataggcACCGGTCGAGGCACATTAAGACTGCGATCAAAAGGGCCAGCGACCGTGGAGGAAGTTTGGAAAATTATTCTTCAGCCAACAGAGTTTGAAGAAAAAGCGACAAAGAAAGTGGACGACCTTCTGGAAAGCTACATGGGAATCCGAGACACTGAATTAGCTGCCACCATGGTAGAGGTGGGAAAGGACAGAAAGAACCCAGATGAGTTTGCCATGGCGCTGGACGAGGCCCTGGGCGACTTCGCCTTCCCAGATGAGTTTGTGTTCGACGTCTGGGGAGCAATAGGAGATGCCAAGCAAGGCCGGCTTCAATAAGTGTTGTACATATGtcaaagagggaaaaaaaggaaaaaaacaatagcagtGTTTTgggattatttgttttttttaagatttttttttatagattatAGTACTGCAAACACAACTGTGatctaaagaaaaatatatttttaacctacattttagtttgtgtgttttttttttattattattaattcaagtTTACTTTTGTCACCACAAGTACTGCTGCTTGCTCCTtaacttaaattattttctttctcattcaaatatattttctagaTTAACGGTACACTGAGGAAACTTAACGGCAGCAATATGGAATTTCACTCAAACGCATACATGCATTTTCCACAAGCTTTACTCTCAGACTCTCCATATATAGTTTAAATTGCTCTCCCTTTTCATGTTCTGGGTCTGAACATCGCAGACCCTCTAGGTTGCATCTGGGGGAACTGTAATCGTTCCCTTCAGGACTCTGTAGATTGCAATTGAACTCACTTCATGATGAATGGCCATCTAGTGAGTATTTGTAAATTTCTACTGACCCCTGAAGCCTTTATCCTCTTCAAAGCTAAACCTAATCGATCATCAAAGCAGAATTTATTTGAACAGACTGTGGGTTTTATGAAGAAACCATGCTTTAATTAATCTCTGTCCATTGGTTTTATTGGTTCCTCTTGATTTTTGTACCATTCCCCCCCCCAGTCATTCTCTATCCTGCATGCCACACAATCTGCAGCCTGCGTTTCCCCCCCCGCGTGGAAATTTAACCAGGGAGCGCTACACAACCAAACAATATCGTCTGCTTCAATGAGTGACATGCCCAACGGCCACTAAGATCTAATTGAATTGCCgctttaatttcattaatttaggGAACAGGGGGAAAAAGTGATTATAATATGAATGACCATTCCTTTCATTGAGTTTTAGACGATTGTgctcctaaaaaaaaaaaaaagcaacactcTACATACTCTACAggtgtttagattttttgtatctcatttaatttatttgtttaatacaatatttgaatattatatAACATGAATCTATTTTTTACAATGTGAAAATGAGAGAAATTAGTTAATAAATTTGAATTATCCTTTATATGCCTCTGATATAAGTGTCTTTCTTTAGTAATTGAATCTTTTCATTCTATTTTGGAGATTTTGGAGGGTGTGGTAATTGCATAGCTATAGTAGTTTACGTCAAGCTTTGATGTTGAATAGTTGTATAGTTGAAtagattatattgtttttaaattgaaaaggtTATGGGGAACAATATGAAAGGCACGAATTAGCAAATTGCATTGTGATTCTAACCATCCTTCATCCACGCCTTCTGCAATTTCATATTGAATTTCATTGAATCACTATGATAGTCACCCTTTAATTCAGAGATGCATTCCTATTAGATACGCGTGTAAATACtggaatttaaaaagcaaacaaaaaaaaacaaaaacaattgtagTTAAGCAAGATTTCACTGGATGAAGGGAAAATGATAAGTTGATATTTTGGGAATAGACTTCATAGCATATCATAAACATTCCCACAAATGATTACTTCAGATTCTTAATATCTCTGAAATGTGCTAGTGACATAGAAGTTCAAAGctcatttaatgttaatttaatgttgaCCTTTATTATGTAGATGACCATGTGGACAATGGACAATCAAAGCACTTGAtgtgaatgtgtatatacagcatgttattatatgaaaatgcatattgtcaGAAATGTATGTTGGTAATTTAAGGAGAAAGGGATGATGTGGAAAACTATAGTCAAAAGCAATTTTACTTTTGGAAGTGCAAGTAATCTAGGTATACATAGACTGGAGTTTTGATATCTGCATCACATTAGTACTTAAAATACAAGACACATGTTCATATTCCATTCAGATGAGTGTGTCCTTTTTATtggcttttattatatttacttacagatttaaaacactgaTACAGTTTATACGGGAATCTTTCTGCTTTTTCAAATTGATGgttgaaatataaagaaacaaaatgctacAGTGACTCATGTGTACTTTTAATGCCATAACCACCATAGTTATGGATAGCATAGAAGAAGTAATACTCTGACTTTTGGGCATTATTCCATTGTACATCGGTCCACATGTAAATCTACATATCTGTGATGCATACAAAAACTGCtaccaaataaagaaaagcaatacaatgACTGgacttgaaatgttttttttcacccctGATTTGTGGGGTGTAAACCTTGGCATAATATATGCTTCCCTTTATCATTTAATGTGCTCAAATTGTAACAAAAGCTT

Function

symbol description
gipc2 Acts upstream of or within sprouting angiogenesis. Is expressed in several structures, including cardiovascular system; ectoderm; nervous system; segmental plate; and swim bladder bud. Orthologous to human GIPC2 (GIPC PDZ domain containing family member 2).
dnajb4 Predicted to enable chaperone binding activity and unfolded protein binding activity. Predicted to be involved in chaperone cofactor-dependent protein refolding. Predicted to act upstream of or within protein folding. Predicted to be active in cytosol. Orthologous to human DNAJB4 (DnaJ heat shock protein family (Hsp40) member B4).

NR:

description
PREDICTED: PDZ domain-containing protein GIPC2 isoform X1

GO: NA

KEGG:

id description
K20056 GIPC, SEMCAP; PDZ domain-containing protein GIPC

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004971 True 5220 mRNA 0.42 8 11282626 11309243

Neighbor

gene id symbol gene type direction distance location
AMCG00004960 NA coding downstream 19795 11254762 ~ 11262831 (-)
AMCG00004963 bt3l4,btf3l4,LOC107655993,LOC105028135,LOC103026176,LOC107562065 coding downstream 34872 11244611 ~ 11247754 (-)
AMCG00004961 LOC107553256,LOC107677579,LOC107732202 coding downstream 39200 11217636 ~ 11243426 (-)
AMCG00004962 NA coding downstream 81626 11196475 ~ 11201000 (-)
AMCG00004949 mob3c,LOC106613547,LOC106574029,LOC108270829 coding downstream 119057 11151383 ~ 11163569 (-)
AMCG00004973 NA coding upstream 20000 11329243 ~ 11339610 (-)
AMCG00004972 NA coding upstream 34089 11343332 ~ 11361553 (-)
AMCG00004997 NA coding upstream 103656 11412899 ~ 11438182 (-)
AMCG00004999 ak5,LOC102787869 coding upstream 142499 11451742 ~ 11462502 (-)
AMCG00004998 st6galnac5,LOC103370426 coding upstream 200977 11510220 ~ 11525189 (-)
G144587 NA non-coding downstream 28052 11253615 ~ 11254574 (-)
G144502 NA non-coding downstream 324625 10956085 ~ 10958001 (-)
G144353 NA non-coding downstream 1344015 9937980 ~ 9938611 (-)
G144295 NA non-coding downstream 1531848 9744869 ~ 9750778 (-)
G144292 NA non-coding downstream 1582217 9699314 ~ 9700409 (-)
G144612 fubp1 non-coding upstream 9883 11319126 ~ 11322006 (-)
G144614 NA non-coding upstream 13340 11322583 ~ 11328481 (-)
G144657 NA non-coding upstream 189929 11499172 ~ 11501075 (-)
G144659 NA non-coding upstream 196435 11505678 ~ 11506002 (-)
G144672 NA non-coding upstream 261947 11571190 ~ 11572410 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 2376032 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 2434851 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 2905625 8353989 ~ 8377001 (-)
G143659 NA other downstream 5499442 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 7166212 4109082 ~ 4116414 (-)
AMCG00005011 best4,LOC103396708 other upstream 826135 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 1035428 12344671 ~ 12348328 (-)
G145046 NA other upstream 2026966 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 3655171 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 4193839 15503082 ~ 15535145 (-)

Expression


Co-expression Network