AMCG00004978


Basic Information

Item Value
gene id AMCG00004978
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11883083 ~ 11889871 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004978
TTTATTAAGATAAATGTTATGACAATTTACCTTTTTATGAGCAGGAatgatatttgtatattataaataaaataaaaaaaactacatccTGAGTGACAAACCTTAAGCTATTATTACAACTTATTTATTAGATGTAAATGCTCTATTTTAATAGAGTGCTGTGCACGTTTAACTATGTAgttccagaaaaaaatacagtttatttgaCTTCGGTAAGAAAAACAGTGACTTTCATTAGCAGTTGTTGTCAAAATATGACTGGATGAGTCAGTTGGGCGCCGAGGAGTTGCTGGTGTCCTGCTCCGGGTCACTGGCGCTGCGGCACGGCCGGGCGGTCTGCCAGGGGGACCCACCTGCGGAGCTCCGGGACGTGGTGCTGCTCACATTGGGTGGCTTGCGACTGAAAAACGTGCAAAACCTGGACTATTGCACAGCACTTCAGATCTGCATCCTGGCAAACAACTACATCACGAAAATCGATGCCCTCATCAGCTGCCACTGTTTAGTTAGACTAGATCTTCATAGAAATCAGATAACACAGCTCCCAGGAAGTGTGTTTTGGGCTGCTATGAAGAATTTGCAAATCCTCAATCTGCATGACAACTGCATTGGAAACAAGAAGGACATGGAGGGGCTGTCAGGATGCCCACACCTCATTGCCTTGACCTTGTTCGACACTCCACTGAGTTTGACACTAGGGTACCGACACTGCATTGTCAATAGCATATGGTCTTTGAAGGCTTTGGATAACTTTGTTGTGTCAGATGAGGAGATCATTGAAGGCTGGTCTCTTCCTCGCAAATTCACAACCAAGAGCCCCCATTTGTTTGTGGATCTTTGCCCAAGATCTAAAAAGGTAGATATCAAGGAATCGTTTGAAGGTGAAATGAAGATAGTCAGAGAGGTTGTCTCaaagataaatacaattctAGCCTTTTACTCGCCAATGACAATTATTCAACGTTGGATTCGAGGTCACCTGACAAGAAAAAGACTTGgTCATATCTACTCAGCTTCCAGTGGACAGTGGTCTGAGGGTCAGAAGGAAACCAGAAGGAATTCTTGTGCCATCCAACAACAGAATTCAGAAGAAAGAGATTTGAAAATCATGCATCTTACTTTGGACTTGACCAAACTTCTGAAATCTGAAGCTCTCCAGAGCAAAAGtcaaaaggacaaaaaaaggaaaaacagcacATTGAACAGAGATGTATCACCCTCAAAAGAAGTAATGGAAGAGGAGCTTGAGAAGGTACATTTTCGCTTGTTAGGATTCAAGGCAGTCTTCCATCATGTGGATCCAGTCAGTGTCATGCTGATGTCCCGGAAAGAGAGTGCAAAGGACATTAGGCAGGCCATTGATGACTTCCACTCAGCAAAGCAGGAAGCTGAGAAGCCTAAAATCCCTTACCTTCCACCAGTGAGTGCAGAGAAGAGACTGATCGCCAAGGCACATGGATCCATCAGCCTTGCTCCTTTCCAAGTCATTGAAAAGGCATACAGGGAGAGGCAGAAAGCTGAAAATATGGCCAAAAAGATTGACTTTGTCACACAGGTCCATGCTAACAGAGTGGAGGTGCAGAATCACGTCGAAGGGCACATTGAGGTGAGGAAGTATGGAGCTCTTCAGAGACGAGAGAAGGATGACATGGAGCGACGGAGCGCCCTGGAGCAGCAGAGGCTCAGCCAGACCAAGTTCATAGAGTCGGCACGGAAACGTTATGCCAGGTTTGCTGAGAAGAAGAAACGGCAGGCTGCTGAGCATGCGCTAGTAAAGGATTTCAGCTCCCAGCATATATCCCTTTCCAAGACCATGGCGAGACACAGCACACAAGTGAGGCAGTGTGCCATACAGCAAGAGAAGAGTGACCTAGTGGTGAGCTGCAAAGAGCAGGCGGAGAAGCAAAAGCAGGTCAACAGGGCCTATATAGAGCACAggaCACTGGCACTTCAGGCTGAGGGTATTGCCAAGCGAGAGGCTGTGGACTCATTTCTGGCCGACGAGGCTAATAAAAGACTCCTGGAAGCCAGAGCCCGGGTGTCATCTCTGAAGTCACAACATGCCACCATGGAAGCTATGAGGCCAGTCCCAGTTGATCAGACCCCTCAAAAAGTGAAAGCTTAAATATTCACTCAAACCACACAGCGCTCTATCAGACTACAAGTAACCATGGGTCTCTACACATGTACATGCATGTAAAATTGCCTTGTgacttgtttattatatttatctaaATTAAACGTTTCTTGTGCGAAATAAATGGCATTCATGTAGTAACTTGGCACCATAGCCTGGGTCCCACAAAGGCAATGCAAAGGATAAAGAGCctaaaaagtaacaaaacagTTTCCTGGACTGACCTTTATCTATGACGGGAGaactttgtgttttctgtgtcttGCCCttcattatattaaatgtaacaggAATGTTTCAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004978 True 2440 mRNA 0.45 8 11883083 11889871

Neighbor

gene id symbol gene type direction distance location
AMCG00004992 NA coding upstream 16645 11860415 ~ 11866438 (+)
AMCG00004991 erich3 coding upstream 32842 11841166 ~ 11850241 (+)
AMCG00004993 cryz coding upstream 42386 11838946 ~ 11840697 (+)
AMCG00004974 slc44a5,LOC106613541,LOC106574020 coding upstream 100938 11759921 ~ 11782145 (+)
AMCG00004975 NA coding upstream 125907 11717322 ~ 11757176 (+)
AMCG00004979 NA coding downstream 793 11890664 ~ 11896684 (+)
AMCG00004977 NA coding downstream 66307 11956178 ~ 11979422 (+)
AMCG00004986 NA coding downstream 95389 11985260 ~ 11999730 (+)
AMCG00004984 NA coding downstream 113564 12003435 ~ 12007140 (+)
AMCG00004982 NA coding downstream 119040 12008911 ~ 12010194 (+)
G144683 acadm,LOC107094222,LOC102791601,LOC107094221,LOC107584839,LOC107674066 non-coding upstream 206178 11674239 ~ 11676905 (+)
G144682 NA non-coding upstream 209568 11672872 ~ 11673515 (+)
G144681 NA non-coding upstream 210598 11671555 ~ 11672485 (+)
G144680 NA non-coding upstream 211641 11669475 ~ 11671442 (+)
G144668 NA non-coding upstream 305836 11570936 ~ 11577247 (+)
G144788 LOC104960733 non-coding downstream 209493 12099364 ~ 12192733 (+)
G144804 NA non-coding downstream 304255 12194126 ~ 12194338 (+)
G144805 LOC107679324,LOC107728925 non-coding downstream 306401 12196272 ~ 12196773 (+)
G144809 zswim5,LOC106569256,LOC107728925,LOC107679324 non-coding downstream 349620 12239491 ~ 12242198 (+)
G144811 NA non-coding downstream 366417 12256288 ~ 12257869 (+)
G144677 NA other upstream 219715 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 1867659 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 2132306 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 4149024 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 4190722 7672816 ~ 7692361 (+)
G144940 NA other downstream 890709 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 2265284 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 3489728 15379599 ~ 15384811 (+)
G145932 NA other downstream 5875386 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 6925158 18815029 ~ 18821642 (+)

Expression


Co-expression Network