AMCG00004980 (acot11,LOC106574016,LOC105895251)


Basic Information

Item Value
gene id AMCG00004980
gene name acot11,LOC106574016,LOC105895251
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11898180 ~ 11914425 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004980
CCGCTCAGCTGGGTCCATTTTAATGAGGGGCACCCTGGGAAACAGGCGACCGGTGGCACTTTTTGAGGTGACGGCCGCTGTTGTGCGTGTTTTGCCCGAATCGGTGCCAGTCGTGACACAAGCCGGACCGGGTTGGACGCGTGTGATGCCAGTGTGAGCCGCGGTGGGCACTTCGAGGGCTGTCTAAACAGTTTCTCGGCAATGTCTTCGGGCAACATGGAAGAAGAGCAGCAGCTGGAAGAGCCCCTGTTTATCCTGGAAAATGGAGAGGTTTACAGAAACCCTACGGAAGTCAAGATGAGTCAGATCGTGCTGCCGTGCCACGCAAACCACTGCGCCGAGCTGAGCGTGGGGCAGCTGCTCAAATGGATGGACTCCACCGCCTGTCTGTCTGCTGAAAGGCATGCTGGGTGCTCGTGTATCACAGCCTCCATGGACGACATCCATTTTGAACACACGATTGGGGTTGGACAAGTAGTAAACATCCAGGCGAAGCTCAACAGAGCTTTCAACTCGAGTATGGAGGTGGGCATCCTGGTGAGCTGCGAGGATCTGTTCAGCGAGCGGCAGTGGAAAGTGTGCAATGCCTTCGCTACTTTTGTGGCCCGACGCACAGATTCAGGGAAGgtccAGCTGAAGCAGATCCTGCCCAGGACCCAGGACGAGCAGATGGAGTACAGTATCGCTGCCGAGAGGCGGAGGATGAGGTTGATACACGCTGACATCATGAAGGACCTGCTGAGCAACGGCCCCGTGTCCAGAGTAGGGGAGTGCCAGGAGTACCAGAACGCGGTACCAGCAGAGAAGACACGGGTGGAGAGTGTGGAGCTGGTCCTGCCCCCTCATGCCAATCACCAGGTCAACACCTTCGGAGGGCAGATCATGGCGTGGATGGAAAATGTGGCCACCATCGCTGCGAGccgCCTGTGCAACGCTCATCCTACTTTACGAACTATTGATATGTTTCACTTCAGAGGGCCTTCTCAAGTTGGGGACCGGGTCATTTTACGGGCCATCGTCAACAATACGTTTAAGAATAGCATGGAGGTTGGTGTGCGTGCGGAGGCCTACCGAGGCAGGGAACCACTGCGCCACATCAACAGCGCCTTCATGACCTTCGAGGTGCTAGACGAAGACAAGAAGCCGCGCACTCTTCCTCGCATCAGACCAGAGCCAGTGGATGGCATGAGAAGGTACAGGGAGGCCATCGCCAGGAAGAAGATCAGACTAGACAGGAAGTATATCATCTCCTGCAAGCAAACAGAAGTGCCGCTGTCTGTCCCATGGGACCCCAGCAATCAGGTGTACCTTAGTTACAACAACGTGTCGGCACTGAAAATGCTAGCGGCGAAGAACAACTGGGTGTTGAGCTCGGAGGAAAATAAGGTCAGTCTGTACACGCTGGAGGAGAACCAGTTCCTGTCGTTCAGAGTGGAGATGAAGGTGGACGTGCCGGCGGAGAGGGTCTTCATCCTGCTGTCAGATCTGAGTCGCAGGCAGGAGTGGGACAGCCATTACAAACAGTGTGATGTGATCAACCAGGTGGACGAAGATGACGTCATCTACCGCGTTGTCACTCCCTCCGTTAGCAAGGACAGCAAGTTCCAGGACTTCGTGCTGCTGGCCTCGAGAAGGCAGCCGTGTGACAAAGGGGATCCTTACGTGATAGCGCTGCGGTCCGTCACCCTGCCCACCCACACTGCCACCAGCGACTGCAACAGGGGCGAGGTGCTCTGTGCGGGATTCACCATTTGGGAAGAATCCAAAACTATAACGAAGATATCTTACTATAACCAAGCAACTCCTGGGGTCATGCCATACATCTCCACTGACATTGCTGGGCTCTCCTCCCGTTTCTACAGCACCTTCTGCGCCTGCAGTAAATTCCTGGAGGAAAACAAGGACGGCTCGCCAGCTGTTCAGTCTGCAGCGCTGTGACACGAGACTTTAGAGAAGAACGGGAAATCGGAAAATGCAACCGTCTATTGTCAATATTAAATTTAGGACCAGAATAATAATCGGCTTCTCTTTTTGTAAACTGACATTAAATATGTCAAGTGGTGCTGATGGTACAGGTTGGTTTGTTTCAGACACTGCTTTTGTGCATTATCACTACATCGGTGTTGGGATAAAATAATCTGGGaccagtacaaaaaaaaaagaagaatccaCAAGAACGCACAGGTAGCTTTTTCACAATTCTGTTTCACACTGAAGAATTTGTACATGACATTTTTCAGTTACACTACCCTCTATTGGTAGAGATTTAAGAGTCATGAATTTTGAAACCAGCCCTTTACATAACCTACAGTAAACATCTTACATGCTGATGGGTTGGGTTAGGCAGGTGTAGCAGTTTCCGCTCACCTATCCTGTAGTTAATCTTCATTCTAAATCTTGtttcagattcttttttttctaccGATATTGAACTTCCAGATCCCTCAGTCATATGAAGAAGCCCTTATCGGTGTCTTCTGAGAGAATATCCTACATATCTTACATTTGGGTGCAACAGTGAATCTAGGCCACAGATACTTCAGCTgtttgagttaaaaaaaatatttaaagtcgAATATTTTTTACCGCTAAGAAATGAACATCACAGTGCAGTGGAATCTATGCTGCCTGTGATTAATGGTGTGCAAACAGGGCTGTGCCGGTAAACCGTACACAGTATTACCAGCCGCTGCGGTAAATTCTTCAGCAGTATATTGATACTAAACTTTGGTCACTAGCACAGCCCTGTGTGTAAATATTGCAATAATGTTGGTGTCTTGTCAACTCCATTTTTTTAGTGCATGCTCAGTTCGGTACCTTTTTTTagatatgtttaaaacaaaaaaaatattttgtacaagattaaaaaaaactgctttaaatgtagGTTTATCATCACTGTAGTGACAAGGGATGGCAACGTTGCACGTCCGATTCACTTCTACCTCTATAACTTAACTTCCCCTCTGTGCCGCCTCTATTTCACTTTGAGTaaaaccagcacacacacacacacaaacacacacacacagggtttgGGAGTTTGTTCATGGAATTATGATATGCTGCagtgatgttttgtttaataattattaaatgtttgtgtaattCTGAACTTGGGAAATTAATATAGTTTTCAAGGGTCTGTGGTCTATTTATGCTTATGTAAGGACAGAAACATGAACAAAAGTTTCATGATTgcacttgaaaataaatatggcaTTTGACTTTatgaaaaacaga

Function

symbol description
acot11 Enables long-chain acyl-CoA hydrolase activity and palmitoyl-CoA hydrolase activity. Predicted to be involved in several processes, including acyl-CoA metabolic process; negative regulation of cold-induced thermogenesis; and response to cold. Located in cytosol and mitochondrial matrix.

NR:

description
PREDICTED: acyl-coenzyme A thioesterase 11-like isoform X2

GO: NA

KEGG:

id description
K12417 ACOT11; acyl-CoA thioesteraes 11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004980 True 3243 mRNA 0.48 16 11898180 11914425

Neighbor

gene id symbol gene type direction distance location
AMCG00005002 NA coding downstream 15473 11879855 ~ 11882707 (-)
AMCG00005001 tnni3k,LOC107550356,LOC107743849,LOC107657874,LOC107699804,LOC105895228,LOC107710912 coding downstream 18925 11852911 ~ 11879255 (-)
AMCG00004995 NA coding downstream 62646 11832449 ~ 11835534 (-)
AMCG00004996 lhx8,lhx8a,LOC108436043 coding downstream 101504 11787635 ~ 11796676 (-)
AMCG00005000 acadm,LOC107674066,LOC107602542,LOC107688505,LOC107584839 coding downstream 216714 11669420 ~ 11681466 (-)
AMCG00004988 NA coding upstream 66743 11981168 ~ 11984864 (-)
AMCG00004990 NA coding upstream 76225 11990650 ~ 11993097 (-)
AMCG00004989 NA coding upstream 86686 12001111 ~ 12003204 (-)
AMCG00004987 NA coding upstream 96928 12011353 ~ 12019759 (-)
AMCG00005010 LOC104932872 coding upstream 242155 12156580 ~ 12159972 (-)
G144672 NA non-coding downstream 325770 11571190 ~ 11572410 (-)
G144659 NA non-coding downstream 392178 11505678 ~ 11506002 (-)
G144657 NA non-coding downstream 397105 11499172 ~ 11501075 (-)
G144614 NA non-coding downstream 569699 11322583 ~ 11328481 (-)
G144612 fubp1 non-coding downstream 576174 11319126 ~ 11322006 (-)
G144821 NA non-coding upstream 95493 12009918 ~ 12010371 (-)
G144826 NA non-coding upstream 109089 12023514 ~ 12029449 (-)
G144877 toe1,LOC107579611 non-coding upstream 388154 12302579 ~ 12302836 (-)
G144878 NA non-coding upstream 388540 12302965 ~ 12303263 (-)
G144879 NA non-coding upstream 388986 12303411 ~ 12303620 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 2991586 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 3050405 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 3521179 8353989 ~ 8377001 (-)
G143659 NA other downstream 6114996 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 7781766 4109082 ~ 4116414 (-)
AMCG00005011 best4,LOC103396708 other upstream 220953 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 430246 12344671 ~ 12348328 (-)
G145046 NA other upstream 1421784 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 3049989 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 3588657 15503082 ~ 15535145 (-)

Expression


Co-expression Network