AMCG00004981


Basic Information

Item Value
gene id AMCG00004981
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12020156 ~ 12024199 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004981
GCTTGGCCCAGAGCAGACGCTCAATTACCGgtattcaattacatttgatCCACTTAACTCAAAGTTACTTTTAAGAGAGTATGTACAGTATTCAAATGCATAATCTGATTACAAAAGTAACCAGCAAACAATCAGGTCATTTATGTTGCGTCCCTTTTAAGTGATACAAATGTAGCGGTGGCTGTTCCAATATGACGCGTCAAAGGCGGAAGAAGTTGATATTCGGTCTGCAAAACAAGGCTGGTTGaagtTTCTTTTTTGGTTGGATCAAGAGCAGGTGTTTGAATGGCGGCTGTAGATGATTTGCAGTTTCAAGAGTTTGAGGACGCAGAGAACCTGCTGGCTGCCAACAGGGATGCCACCACAATCAGCATTGGGGATCCCAACGACAAGCCAAGAAAGCAGCGCAGGACTGTGGGGACGGCCTCCAGAGAGGAGGACGATGATCTGCTCGGGAACGACGACTCCGACAAAACGGAGGTGGGGGAGCTGGGGAGCTGTTttacagtggggggggggggttggGTCCTGGACAGAATAAAAGGCTCGCTTGTGCCTTGGCCTGGCAAGAACTTTGTCAGACTGTACGTCCGCAGTAACCCGGATCTCTACGGACCTTTCTGGATTTGTGCCACCCTTGTGTTTGCCATTGCCATCAGTGGAAACATATCTAGTTTCCTGGTGCACCTTGGCCAGCCTGACTACCACTATGTGCCTGAATTTAGGAAAGtaaCAATTGCTGCCACTGCTATCTACAGTTATGCATGGCTGGTTCCTCTGGCACTCTGGGGCTTTCTGATGTGGAGAAACAGCAAAGTCATGAACATAGTGTCTTATTCATTTCTGGAGATTGTCTGTGTCTATGGATATTCCCTGTTTATATACATTCCTGCAGCGGTCTTGTGGATTATTCCTGATGAGTCTGTGAGATGGGTGTCCATCGTGATCGCCATGTGCCTGTCCGGGTCGGTTCTGGTCATGACGTTTTGGCCGGCTGTTCGAGATGACCACCGCAGGATTGCAATAGCAACCGTTTCAACCATTGTAGTTCTTCATGCCTTGCTTGCAGTTGGTTGCAAGGTATGGGgagttgtttttattctgtatagGTCACTTACGTTGAAATGTTTGTcacttttaaaaaaaagagaggaaaaaagtgtTGGAATATATTCAGGTCTGGATTTCTTGACACAACACTAGTCATAACGAGGTATAGACGCATGCTCAACTCCACTTCCTTGTCTAAATCAAATGTCCTGGGCACTTCACATCTGCCCAGACtctccagtgttttttttcttctttgtccTGCATTTGGATCTGCTGTGCTGGGCTGTACAACTGTTATTTTGGTACGGCACTTGCAACTGTGTGAATGTATCCCATCAATGCTGAGGATAGTGTTAGTTTACTTTGGAGGACTTTAATGGAAACTTTGACACCTGTTGTAGACTGCTCTGGAATACTGCCAGTCAGTGTTCAAAAGACTACCTTTCAGGTATAAAACCGCTCGGCTTTGCAGTGCTATCAGATGTCTGACAACTTTTATCATTAGTATCCAC

Function

GO: NA

KEGG:

id description
K22940 YIPF1_2; protein YIPF1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004981 True 1565 mRNA 0.46 7 12020156 12024199

Neighbor

gene id symbol gene type direction distance location
AMCG00004985 NA coding upstream 2751 12015575 ~ 12017405 (+)
AMCG00004982 NA coding upstream 9962 12008911 ~ 12010194 (+)
AMCG00004984 NA coding upstream 13016 12003435 ~ 12007140 (+)
AMCG00004986 NA coding upstream 20426 11985260 ~ 11999730 (+)
AMCG00004977 NA coding upstream 40734 11956178 ~ 11979422 (+)
AMCG00004983 NA coding downstream 4998 12029197 ~ 12037382 (+)
AMCG00005008 glis1 coding downstream 42185 12066384 ~ 12083501 (+)
AMCG00005005 glis1,LOC105895029,LOC106574011 coding downstream 76861 12101060 ~ 12112928 (+)
AMCG00005007 NA coding downstream 126289 12150488 ~ 12155810 (+)
AMCG00005006 urod,LOC107674254,LOC107602521,LOC104943951 coding downstream 147968 12172167 ~ 12178452 (+)
G144683 acadm,LOC107094222,LOC102791601,LOC107094221,LOC107584839,LOC107674066 non-coding upstream 343251 11674239 ~ 11676905 (+)
G144682 NA non-coding upstream 346641 11672872 ~ 11673515 (+)
G144681 NA non-coding upstream 347671 11671555 ~ 11672485 (+)
G144680 NA non-coding upstream 348714 11669475 ~ 11671442 (+)
G144668 NA non-coding upstream 442909 11570936 ~ 11577247 (+)
G144788 LOC104960733 non-coding downstream 75165 12099364 ~ 12192733 (+)
G144804 NA non-coding downstream 169927 12194126 ~ 12194338 (+)
G144805 LOC107679324,LOC107728925 non-coding downstream 172073 12196272 ~ 12196773 (+)
G144809 zswim5,LOC106569256,LOC107728925,LOC107679324 non-coding downstream 215292 12239491 ~ 12242198 (+)
G144811 NA non-coding downstream 232089 12256288 ~ 12257869 (+)
G144677 NA other upstream 356788 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 2004732 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 2269379 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 4286097 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 4327795 7672816 ~ 7692361 (+)
G144940 NA other downstream 756381 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 2130956 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 3355400 15379599 ~ 15384811 (+)
G145932 NA other downstream 5741058 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 6790830 18815029 ~ 18821642 (+)

Expression


Co-expression Network