AMCG00004984


Basic Information

Item Value
gene id AMCG00004984
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12003435 ~ 12007140 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004984
GCACTGCGAAGGCATTTGTtttgaacaacaaaacaaagatggaGGTGTGGAAGTTGTCCGGGGTTATCTTGAGTTTCTGCTGCTTACTGGTGTGCGCAGCTGCCTCACCCGATATATTTGACGGCGTTTTGGGAAATACAATATCCTGCCATAAGACCTGCCAGATGACGTACAGCCTGCACACCTACCCCCGGGAGGAAGAGCTGTATGCCTGCCAAAGAGGATGCCGACTCTTCTCTATTTGCCAGTTTGTGGGCGATGGAGAGGACTTGAACCACACTAAGTCCGAGTGCGATTCGGCTTGCCGTGAGGCTTACATGCAGTCAGAAGAGCAGTATGCCTGCAACCTGGGGTGTCAGAGCCAGCTGCCCTTTGCTGAGCAGAGACAGGAGCAGTTATTGGCAATGATGCCCAGGATTCACCTTCTGTATCCTCTGACCCTTGTGAGAGGATTCTGGAATGACATGATGAGTTCTGCCCACAATTTTATTACCTCCTCATGGACTTTCTACCTGCAGGCGGATGATGGGAAGGTGGTTATATTTCAGACTGAGCCACAGATCCAGTTCATTCCTCAGTTTGAACTTCAGAAAGATGAGCTGAAGGAAACCTCTCCTGCAAAGACCTCCTATCAACACCTTGACAGCCCAATCTTTAAAGATTACAACAAGGGATTTGTACAAGAACGTGAGACTAATGTTTACCTGGATAACAATGATGTGGACGATGACTACAACTTGTTTAGCTGTCTTTCAAGAAACCCCTGGCTGCCCGGATGGATCTTGACAACCACTCTAGTGCTGTCGGTTCTGGTACTGATCTGGATTTGCTGTGCAACAGTCGCTACTGCTGTGGACCAGTATGTCCCAGCTGAGAAGTTAAGCATCTATGGTGACATGGAGTACATGAAGGACCAGAAGCTTACCCCGTACCCAGCCTCCTCTCTGGTGATCATCAGTTCTGTGGCTGAGGAAGAAGCCGGGCCTTTACCATCAAAAGTCAACCTGAACCAGTCGGATATTTAGCATCTGGAggggtaaaaagaaaaatgaatggggtggggggtgacaACACAATGAGCCTGTGAAACATCAGTCTTATAAGTCTTActcttgtttttctaaattgCGTGGGTTACATGAAGTTTACTGGGTTAAcctattacaattttaattactgATTTCAGGGCTGGCTTGCatcatcctgtttttttttttttttttcttgtcttctaAACCTTGGATTAGGAGAAGAGCGACCAATACTGTTGCTCTTTTGTAGATTTGCACTTTTTTGCAATACACTACCCAATAGTGTCCTGTTTAACCTTGAAGGATTGGTTCTATGGTATGTTTTAGGCCTCTGTTTGCTATAGTTGCAAACTGTTTAATTGTTCTGTGGTTTGTGCTAACCTTTTGGAACAGCTGGCCAACAGCCCAGGTTGTGTTCTGCCGCTGTTAAATTTAACAGATTGTTGAAATGTATGGGATTGGCACTGCCACTGGAAATGTCATATTCATTAGTGTGCTTCATTGATTTCAGTGGCAACAGCGtttactttaaattattgtGTCCCTGTCATTCAGGCCAGTTATctcttatataaaaaaagaaaaacatgcatcagAAGAAGATAAAtaactgaatgaataaataaatgcacctTTGCTTAGACTAAGTCATCAGTGAAATGTTGGAATGGTCAcctggaaataattatttgtacagACCAAAATGTGTGCTGGGTTGTAAATCTTTGCTACTGCAGGTATTAGGAGAGTTTACTATCTCATTATGCCTTTAGATATTTATAGGTATTTTGGCATTCTTGTCTCCACTTTgtaatgtttagttttgttttttctcatttttttcatGATTAAATTTGGGGTTTGTCtttggaaa

Function

GO:

id name namespace
GO:0032266 phosphatidylinositol-3-phosphate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004984 True 1905 mRNA 0.43 8 12003435 12007140

Neighbor

gene id symbol gene type direction distance location
AMCG00004986 NA coding upstream 3705 11985260 ~ 11999730 (+)
AMCG00004977 NA coding upstream 24013 11956178 ~ 11979422 (+)
AMCG00004979 NA coding upstream 106751 11890664 ~ 11896684 (+)
AMCG00004978 NA coding upstream 113564 11883083 ~ 11889871 (+)
AMCG00004992 NA coding upstream 136997 11860415 ~ 11866438 (+)
AMCG00004982 NA coding downstream 1771 12008911 ~ 12010194 (+)
AMCG00004985 NA coding downstream 8435 12015575 ~ 12017405 (+)
AMCG00004981 NA coding downstream 13016 12020156 ~ 12024199 (+)
AMCG00004983 NA coding downstream 22057 12029197 ~ 12037382 (+)
AMCG00005008 glis1 coding downstream 59244 12066384 ~ 12083501 (+)
G144683 acadm,LOC107094222,LOC102791601,LOC107094221,LOC107584839,LOC107674066 non-coding upstream 326530 11674239 ~ 11676905 (+)
G144682 NA non-coding upstream 329920 11672872 ~ 11673515 (+)
G144681 NA non-coding upstream 330950 11671555 ~ 11672485 (+)
G144680 NA non-coding upstream 331993 11669475 ~ 11671442 (+)
G144668 NA non-coding upstream 426188 11570936 ~ 11577247 (+)
G144788 LOC104960733 non-coding downstream 92224 12099364 ~ 12192733 (+)
G144804 NA non-coding downstream 186986 12194126 ~ 12194338 (+)
G144805 LOC107679324,LOC107728925 non-coding downstream 189132 12196272 ~ 12196773 (+)
G144809 zswim5,LOC106569256,LOC107728925,LOC107679324 non-coding downstream 232351 12239491 ~ 12242198 (+)
G144811 NA non-coding downstream 249148 12256288 ~ 12257869 (+)
G144677 NA other upstream 340067 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 1988011 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 2252658 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 4269376 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 4311074 7672816 ~ 7692361 (+)
G144940 NA other downstream 773440 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 2148015 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 3372459 15379599 ~ 15384811 (+)
G145932 NA other downstream 5758117 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 6807889 18815029 ~ 18821642 (+)

Expression


Co-expression Network