AMCG00004985


Basic Information

Item Value
gene id AMCG00004985
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12015575 ~ 12017405 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004985
ATGATAGATGCCGCTTTGAACTCTTCTGGAGCTCAGGTTATTTTAGCTACCTCCAACGACGAAAACTACCCACCAGAAAATATTATAGATGGGAGCAGCGAGACGTTTTGGGTTTCCACAGGGATGTTTCCACAGGAGTTCATCATCCGCTTCTCCAACCCTGTCAAAGTGAGCTTGGTCACACTTCAGTGTTACAATGtgAAACACCTTAAAATTGAGAAAAGTGCTTCCAACGAGGCAGCAGACTTCGAAGCAGTCATTGAGAAAGAATTTGAACACACAGAAGGCCAGCTTCAGTCAAACGACATTGCTTTCAGTGGCACAAGAGCAACCCACCTGAAATTCATCATCCAGTCTGGATACGACCACTTTGTTTCTGTGCACAGGGTAATGGTAGAAGGAACAAGCGAGAGCCACATGTGA

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process

KEGG:

id description
K19369 HSPB11; heat shock protein beta-11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004985 True 423 mRNA 0.45 5 12015575 12017405

Neighbor

gene id symbol gene type direction distance location
AMCG00004982 NA coding upstream 5381 12008911 ~ 12010194 (+)
AMCG00004984 NA coding upstream 8435 12003435 ~ 12007140 (+)
AMCG00004986 NA coding upstream 15845 11985260 ~ 11999730 (+)
AMCG00004977 NA coding upstream 36153 11956178 ~ 11979422 (+)
AMCG00004979 NA coding upstream 118891 11890664 ~ 11896684 (+)
AMCG00004981 NA coding downstream 2751 12020156 ~ 12024199 (+)
AMCG00004983 NA coding downstream 11792 12029197 ~ 12037382 (+)
AMCG00005008 glis1 coding downstream 48979 12066384 ~ 12083501 (+)
AMCG00005005 glis1,LOC105895029,LOC106574011 coding downstream 83655 12101060 ~ 12112928 (+)
AMCG00005007 NA coding downstream 133083 12150488 ~ 12155810 (+)
G144683 acadm,LOC107094222,LOC102791601,LOC107094221,LOC107584839,LOC107674066 non-coding upstream 338670 11674239 ~ 11676905 (+)
G144682 NA non-coding upstream 342060 11672872 ~ 11673515 (+)
G144681 NA non-coding upstream 343090 11671555 ~ 11672485 (+)
G144680 NA non-coding upstream 344133 11669475 ~ 11671442 (+)
G144668 NA non-coding upstream 438328 11570936 ~ 11577247 (+)
G144788 LOC104960733 non-coding downstream 81959 12099364 ~ 12192733 (+)
G144804 NA non-coding downstream 176721 12194126 ~ 12194338 (+)
G144805 LOC107679324,LOC107728925 non-coding downstream 178867 12196272 ~ 12196773 (+)
G144809 zswim5,LOC106569256,LOC107728925,LOC107679324 non-coding downstream 222086 12239491 ~ 12242198 (+)
G144811 NA non-coding downstream 238883 12256288 ~ 12257869 (+)
G144677 NA other upstream 352207 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 2000151 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 2264798 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 4281516 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 4323214 7672816 ~ 7692361 (+)
G144940 NA other downstream 763175 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 2137750 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 3362194 15379599 ~ 15384811 (+)
G145932 NA other downstream 5747852 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 6797624 18815029 ~ 18821642 (+)

Expression


Co-expression Network