AMCG00004989


Basic Information

Item Value
gene id AMCG00004989
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12001111 ~ 12003204 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004989
CGTCGGGCGAATAAATGAAGTGGAGGGAGCAAATGTGTGTCACTGTCGAAGTACTGTGCAATTCAGGCGCATcgtgttaaaaaatgcaattgtttttaaaagagaaagctTGGAATATGAAATCCGTTTTCCGTTTTATGGATCGGAAGAAAAGAGCCACCAGAACTACATgtaatcccacaatgcaccgttTCGGGTAATACGGAAGTTCTCATGGTAAATGGGCGGGGTTTACATAGATGGTCTTTGCAACTACAAGCTGactgttttaaaatcaaacactGTAATATATCGCGTTGggagtaatttgtttttactttgagaCATCAGTAgatcatttaatatatatatatatctttatggCTGTTGCTATAATCAGTTTTTCGTGATAGGTATTTTCCTGGTATAACTGGGGTTAGTTGATGCTGCAAATGACAAGTGTGATTCgttttaaaagaagaataaaacgAGTATTTGAATTCCAATGTCTGTATAGGTCAACCAAACTGATGGGCACAGCATTACATCCCGTGATTTAGCAGTCCTCAGCTTATTTCTATGTCTGAGaacacaattgtattaaaaGAAGCTATATAGTTTTCACAAAATGGACAGGTTTGTTATAAGGCAACCGAAAGGGCAACCAACACAGGAAAAGAGGACAACAGGCAAAGTATACAGACAAGCAACAATAGAGTCTCTCAGGAGAGTGGTGGTGATAGAAGACATCGAGAGGTTTAAATCAATGCTGGAACTGTCTGGGCAGACTAAGGAGAACCTGTTACTGGCTTTAACAGAGCTCAACAAGAAAGTGCCATCAAAAGAAGTGCTCCGGTCAACGAAAATTGGTCATACAGTTAATAAAATGCGAAAACATTCAGATCCTGAGGTGTCTGCTCTGGCCCGTGAAGTTTACACACAGTGGAAAACTTTCATAGAAGAAAATGCCAACAAACCTTCCATAGAGGTGCGGTGTGACACCCAGACGGAGGGGCTGAGGAGCAATGCAAGGAAACTGCTGGCAGAATCCATGGAGTTGGagATCGATCATGCCCTTATCGAAAACATTGAGAGAGAGGTTTTCCATCAGTGTTCTCGCCTCATCAACGGGGCGTACCGCCGGACTGTGAGGGCACTGGTGTTTGCCCTAAAACACAAAGCCGATATTCGCACCCAGGTCCGAGACAGCAAGCTGCCAGTCAACCAGCTTGTCAAGTCCCACAAAAAACAGACTTAATGGCACTGACTGCAGGATGTCTGATGGAAAGAAATGGGTTTATGCTGCAGGATTTCAGATGCAGCATAACTTAAAAAGCACAAATGTGATCCGGAGCACTGAGATGGcagttttttaatatgttttacttttaggttgttaataaaatacttatttttttttaa

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004989 True 1401 mRNA 0.41 4 12001111 12003204

Neighbor

gene id symbol gene type direction distance location
AMCG00004990 NA coding downstream 8014 11990650 ~ 11993097 (-)
AMCG00004988 NA coding downstream 16247 11981168 ~ 11984864 (-)
AMCG00004980 acot11,LOC106574016,LOC105895251 coding downstream 86686 11898180 ~ 11914425 (-)
AMCG00005002 NA coding downstream 118404 11879855 ~ 11882707 (-)
AMCG00005001 tnni3k,LOC107550356,LOC107743849,LOC107657874,LOC107699804,LOC105895228,LOC107710912 coding downstream 121856 11852911 ~ 11879255 (-)
AMCG00004987 NA coding upstream 8149 12011353 ~ 12019759 (-)
AMCG00005010 LOC104932872 coding upstream 153376 12156580 ~ 12159972 (-)
AMCG00005009 hectd3,LOC107688506 coding upstream 160626 12163830 ~ 12172230 (-)
AMCG00005004 zswim5,LOC107602525,LOC107728925,LOC107674240,LOC107714849 coding upstream 180736 12183940 ~ 12199070 (-)
AMCG00005021 NA coding upstream 281190 12284394 ~ 12288518 (-)
G144672 NA non-coding downstream 428701 11571190 ~ 11572410 (-)
G144659 NA non-coding downstream 495109 11505678 ~ 11506002 (-)
G144657 NA non-coding downstream 500036 11499172 ~ 11501075 (-)
G144614 NA non-coding downstream 672630 11322583 ~ 11328481 (-)
G144612 fubp1 non-coding downstream 679105 11319126 ~ 11322006 (-)
G144821 NA non-coding upstream 6714 12009918 ~ 12010371 (-)
G144826 NA non-coding upstream 20310 12023514 ~ 12029449 (-)
G144877 toe1,LOC107579611 non-coding upstream 299375 12302579 ~ 12302836 (-)
G144878 NA non-coding upstream 299761 12302965 ~ 12303263 (-)
G144879 NA non-coding upstream 300207 12303411 ~ 12303620 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 3094517 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 3153336 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 3624110 8353989 ~ 8377001 (-)
G143659 NA other downstream 6217927 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 7884697 4109082 ~ 4116414 (-)
AMCG00005011 best4,LOC103396708 other upstream 132174 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 341467 12344671 ~ 12348328 (-)
G145046 NA other upstream 1333005 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 2961210 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 3499878 15503082 ~ 15535145 (-)

Expression


Co-expression Network