AMCG00004992


Basic Information

Item Value
gene id AMCG00004992
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11860415 ~ 11866438 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004992
ATGGAAAATGTGTGGGGAGCATACCCAGTCTCCAGACATGTATTTCAGGTACAGCCCAGCTCAGACACCAGCCTCAAAGAGGACGATGATGCACCCAACATCAAAAGATTGTTCCTGGTGTTGCTGACTTCACTCGCACATGCTCAGCTCAAGGATTTCTGTCCTGCCTCTTGCTTGGTGTGCTCAGAAGATGTCATCATTTGTCAGAGGCTTACTTACGTAATAGATCCCCCTCTGACTGCCAAGGCTCTGATCTTCACAGACGGAAACATCGACTCTGTGGACAATGGCACTTTTTCCTACCTGCCCAATATGACCCTGCTTGGCCTCAGCAATAACATCATAGCAACCATTGAGGAGAACGCTTTCCAGAACCTTACCTTCTTGAAAACCCTGCTGCTGGACCACAACCAGATCCACAGTTGTGACATTCAGGATACAACCTTCACCCAGCTTCCAAAACTAGAGACCTTACAACTCGGTAACAATATCCTACAAAGCATTGACGGGAGCTGGTTTAAAGACTTGAGGAACTTGGTGAATTTGCAACTGGAAGGAAATCGTATTTCCAGACTAGACTGGGATACCTTTGCAAATTCCAGCCTCGGGAATCTGGAGACCCTAGATTTGTCCGATAATCTGATCACTTATGTAGCTAAAAACAGCTTTGTGAGTCTTCCTCGCCTGCGCAGGTTAGACCTATCCAGAAACCAGCTGACCGTCATTCCAGATGCCTTTTCATACCTCTCCTGGCTCTCTGCTCTCAACCTCGACATCAACCAGTGGAACTGCACATGTGAGCTGAAGGAGCTGTCTGAATTCCTCAGCAGCTACATCCAGAACCCGGACAAGATCCTGTACAACGGCAAGCGGCTGATCTGTCAGAGCACCGACAACCCCGCCGTACAAACTATCCTACAGCTAACCGAGTCCAACTGTGTGCCACCCAATGAGAACATCAACATCAATATCAAATACAAAGACTTCAGCCAATACAAAAGAGACATCTCTCTAACAGGCATCTTTTGCTTTTTAGGAGCAATAGGGCTTGAATTGACCTTGCTTTACTGCATCTACCACAAACTGAAGCGAAACAAAAGCAAGAGGCATGGAAGTGAGGAGGAAATAGTCTCCGCCAGCAGCACTGTTGCAGATGCAAAGACCCCCCAGTGCACTTTTACTGAAGACAACGAGGTTCAAATCCTTTCCATCGTTCACCCTGGAAGTGAACCCCAACTGATGCAACCAAACAGAACCGGTGCCCAGGACAGGACAGGCTACAGGCAGAGGGGCATCAGAGAGATGGCAACCTCTGACCGAGCAGAGATGAAACCGGCTAGACTACAGCACTATTTTGCATGTCTGAACTGTAACCTTGTACAGTCAGTCTCAGGGCAGGCAGATGGGAACGGGGGAATTGACAATTATAGCAGTGTTGTTTTGCAGAACGGCCGTCGGATAGCAACCAACCCCAGCCATCaggaaagacagacacagagggaggAGATGCAGAGAGACCTACCACAGCATGCCCTGAGGTTTAATGAAGGTCAGCCTAAAAACATCCACTCCCTGCCAGACTACCTCACGATTAACTGTGTGCACTGTCACACAACCTATGAATACAGGAGGGAGGGTAGTAAAGAAGGAAACAGCAGAGAGGAAAAGAACATTGTGAACACCCCGGAACCGGTGCACAGGAAAAAACAGTTCGCTATGAAGACAAAGCTGTACAGAGAAAGAAACCATGATAACACACATCACCCCATAGATTTTGATAAAGATGTTGATGTAACCCAGACTGGGTCACCAAGAATCAAATTAGCACAGGTGTCGAAGAGTGTCACTTTTAATTTGCCAGTCTCCGATGTGCATCTCATTGCCGCTCGAAAGAAAAAAtcttataataaagaaaaaactaaaagtgacTACCAAGATAATGACTTGGTGAACAACAGCTTAAAAACCATCCCAAACATCAAAGATAAGGAAAGGCCGAGAAGTTCATCTGGCAGGACCCCAAAAAGGGAAAAGGTTGAGAAGGGGTCCAGTTTTAAGAAGCACAAACACAGAGTTCAATCGaacagtttattgaaagttaaGATCAACTTGAACCCTATCCGGAAAAACAGAATCAACCCAAATAAGAAAGCAAGTGAAGCGGATATGCAGCAGGAGCAGGTCAAAGAAGAAGCAACCAGCACAACTGCTACTAAAGACAAATCTCCTCAGAGAAAAAGACACCGAGATAAAATTGACAAAGATGTCCCTGTCCCTTCCCAGCCCAAGGAGACTCTAATTCCAcaggcagaaaagaaaaagaagaaaagatccAAAAAAACTCCCATCAACGACGACAATCTCAGCAAAGCAGCTCCGGAAAATAACCCTTGTGTGGATCAGTCAGCAGAAGAACAGGTTAAAGCCCCTAAACGTAAATCTACCAAGATGGATGAAATACCATCCTCTCCAGAAAAGGGGTCTAAAGATGCAATGTCCTTATCAGTCTCACTAAAGGAAATGGACCATCCCCAAAAAGAGGATACAGAAAATGGGGAGGACTACCTCAAGGACAATATCAACACAGATAATCGCAACGAATGTCAGACTAGTTCTCTGGAGTTACAAAAGGAAGTAAATGCAGAAGATCGATTGGAAGAAACTCCACAAGACAGAACGTCCTCAAACAGAGATCAGACACCTTCCAGGACTGATCTGAAAACTGAACACCTTAATGACACAATTCTAGAGGTTCAAATGCCCACTGAGGAACCACAGAAAAATGAGGCCCAGAAGTCTGATATACTCCAGCCCAGCACTGAAGAGATGGTTGTAATCCTTCCCTCTGAGGCCCAGGGAGAAGGGCTTACACAGGAACTGGGCTTGGAGCAGCTCCCTGCAAAACTAACACAGCTACCTGAACAGGAAGAGAGTGACAGCAAAGAAGTCAGcagtcaacaacaacaaactgtcAATCAGGACCCAACACCCACCAAAGCTGATCAACATGAAAATGTTTCAGAGAACGAGTTGGCTGTGGAGAATAAAACCGCAGCAGACGGCACTGATAAACACGATGGCAGCCAGACCCAGGGTGGCAGTCAAGATGAAGAGCCCACTGTGACAAATGCTGTGGCTCAAGTTGAAAGCATACATGAATCTGACATCAAAGCATTGCAGGAAGCAGGAAACGCAGGGCTCAAACCTGCGCAAAATGAGCTGGATGGCAGTTCCAGTGAAAGGTCGGCTCTCACAGAATCACAGACAGACTTGCCATCTGCCAAACCTGAAAGTGGCAGCCAAGACCCTGCAGAGGTGTCATCTGATAGGGAGAATCActccaacaacaacagcacCTCCTCCTCAGTTACCCCCGTCCACGCAGAAGACACTCTGCAGTCTACAATATCTGTAATACCAACAGAGGCTGGGAAAGACCTTGAGGATCTGCCTGCTTCCAGCGTTAGTATACTACAAGAGTACGTTCCTTCAGGAGAAGGCTCTCCGAAAAGGAAGATCAGGCTCATACTTCCTGAGAAAACAAGTAATCGGCCACAGACTGCACTAGACAAGAAGATACGATAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004992 True 3585 mRNA 0.46 5 11860415 11866438

Neighbor

gene id symbol gene type direction distance location
AMCG00004991 erich3 coding upstream 10174 11841166 ~ 11850241 (+)
AMCG00004993 cryz coding upstream 19718 11838946 ~ 11840697 (+)
AMCG00004974 slc44a5,LOC106613541,LOC106574020 coding upstream 78270 11759921 ~ 11782145 (+)
AMCG00004975 NA coding upstream 103239 11717322 ~ 11757176 (+)
AMCG00004976 NA coding upstream 144366 11682833 ~ 11716049 (+)
AMCG00004978 NA coding downstream 16645 11883083 ~ 11889871 (+)
AMCG00004979 NA coding downstream 24226 11890664 ~ 11896684 (+)
AMCG00004977 NA coding downstream 89740 11956178 ~ 11979422 (+)
AMCG00004986 NA coding downstream 118822 11985260 ~ 11999730 (+)
AMCG00004984 NA coding downstream 136997 12003435 ~ 12007140 (+)
G144683 acadm,LOC107094222,LOC102791601,LOC107094221,LOC107584839,LOC107674066 non-coding upstream 183510 11674239 ~ 11676905 (+)
G144682 NA non-coding upstream 186900 11672872 ~ 11673515 (+)
G144681 NA non-coding upstream 187930 11671555 ~ 11672485 (+)
G144680 NA non-coding upstream 188973 11669475 ~ 11671442 (+)
G144668 NA non-coding upstream 283168 11570936 ~ 11577247 (+)
G144788 LOC104960733 non-coding downstream 232926 12099364 ~ 12192733 (+)
G144804 NA non-coding downstream 327688 12194126 ~ 12194338 (+)
G144805 LOC107679324,LOC107728925 non-coding downstream 329834 12196272 ~ 12196773 (+)
G144809 zswim5,LOC106569256,LOC107728925,LOC107679324 non-coding downstream 373053 12239491 ~ 12242198 (+)
G144811 NA non-coding downstream 389850 12256288 ~ 12257869 (+)
G144677 NA other upstream 197047 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 1844991 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 2109638 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 4126356 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 4168054 7672816 ~ 7692361 (+)
G144940 NA other downstream 914142 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 2288717 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 3513161 15379599 ~ 15384811 (+)
G145932 NA other downstream 5898819 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 6948591 18815029 ~ 18821642 (+)

Expression


Co-expression Network