AMCG00004995


Basic Information

Item Value
gene id AMCG00004995
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11832449 ~ 11835534 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004995
ATGGCCGCCGAAAACACATTCAGACAATGGAAAAAACAGTGCTTAAGCAAAATGGATTTCAGCAAGAAGGGAAATGTCGATGAGCACATATTACACATTGTTGGTTTTATTAACGAATCAAAAAGTTACTTCACTACCAGTTCGTGTTCTGGACGAATAATATTGATAGATGGGATCTGTGACAGTCCTGACGTGCAGAAACAGAACTGCTCCTGGCTCTTTGTTACCCACAGCAAGTGCGAGAAGAAAGATGTGATGTCTGGGGTGGAGCGTGCCTGTGGAGatgctgtatttaaatttgaaccATTTGTGCTACATGTGCAGTGTAAACGCCTGGAAGATGCACAGCTCCTGcACTCCGTAGCGATAAATGCAGGCTTTAGGAACTCCGGCATTACTGTTggcaagaaaggaaaaataatcatgGCTGTGCGGAGTACACACTGTCTTGAAGTCCCCCTCAGCCATAAAGGACATGTCCTAGTTAACGAGCAGTACATTGACTTCCTGGTTGAAGTAGCTAAtaagaaaatggaagaaaaccAGCGAAGAATAGAAAGGTTCTACTGCTGTCTACAGTCTGCTGTGGCGGCCGAAAACTCCCTTTGTATGAACACAGACGCCACTACGGACAAATCCACATACACTCGCAGAAGAAGGAGAACGCAGGACAAAGCCCCAAAAGCTTCCTCTCAGAGTCCGGAGGATGCAGTTTAG

Function

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K15450 TYW3; tRNA wybutosine-synthesizing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004995 True 717 mRNA 0.45 6 11832449 11835534

Neighbor

gene id symbol gene type direction distance location
AMCG00004996 lhx8,lhx8a,LOC108436043 coding downstream 35773 11787635 ~ 11796676 (-)
AMCG00005000 acadm,LOC107674066,LOC107602542,LOC107688505,LOC107584839 coding downstream 150983 11669420 ~ 11681466 (-)
AMCG00005003 st6galnac3,LOC106569362,LOC107735094 coding downstream 213174 11603594 ~ 11619275 (-)
AMCG00004994 st6galnac3 coding downstream 252263 11577070 ~ 11580186 (-)
AMCG00004998 st6galnac5,LOC103370426 coding downstream 307260 11510220 ~ 11525189 (-)
AMCG00005001 tnni3k,LOC107550356,LOC107743849,LOC107657874,LOC107699804,LOC105895228,LOC107710912 coding upstream 17377 11852911 ~ 11879255 (-)
AMCG00005002 NA coding upstream 44321 11879855 ~ 11882707 (-)
AMCG00004980 acot11,LOC106574016,LOC105895251 coding upstream 62646 11898180 ~ 11914425 (-)
AMCG00004988 NA coding upstream 145634 11981168 ~ 11984864 (-)
AMCG00004990 NA coding upstream 155116 11990650 ~ 11993097 (-)
G144672 NA non-coding downstream 260039 11571190 ~ 11572410 (-)
G144659 NA non-coding downstream 326447 11505678 ~ 11506002 (-)
G144657 NA non-coding downstream 331374 11499172 ~ 11501075 (-)
G144614 NA non-coding downstream 503968 11322583 ~ 11328481 (-)
G144612 fubp1 non-coding downstream 510443 11319126 ~ 11322006 (-)
G144821 NA non-coding upstream 174384 12009918 ~ 12010371 (-)
G144826 NA non-coding upstream 187980 12023514 ~ 12029449 (-)
G144877 toe1,LOC107579611 non-coding upstream 467045 12302579 ~ 12302836 (-)
G144878 NA non-coding upstream 467431 12302965 ~ 12303263 (-)
G144879 NA non-coding upstream 467877 12303411 ~ 12303620 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 2925855 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 2984674 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 3455448 8353989 ~ 8377001 (-)
G143659 NA other downstream 6049265 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 7716035 4109082 ~ 4116414 (-)
AMCG00005011 best4,LOC103396708 other upstream 299844 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 509137 12344671 ~ 12348328 (-)
G145046 NA other upstream 1500675 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 3128880 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 3667548 15503082 ~ 15535145 (-)

Expression


Co-expression Network