AMCG00005006 (urod,LOC107674254,LOC107602521,LOC104943951)


Basic Information

Item Value
gene id AMCG00005006
gene name urod,LOC107674254,LOC107602521,LOC104943951
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12172167 ~ 12178452 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005006
GGAACGTTTCCGGGTTTGTCATGTGACGAAACAAAGATGGCCGCGCCCAGGCACTTGCAAGGGGCGTGACTGACTGATTACTGAATTCCAGTTTTAAGACTCGGGAGGAGACCACTTAAGAAGTCCGCCGGTTTAGTTACGGTCAGGTGTGTGACGTTGCTGAGACCATCATCGTACTGCTGGGACACTACTGACTTCACCATGGACAAGGACAATCACATTCTCCCAAAGGACTTCCCAGAGCTGCAGAATGACTGTTTCCTGCGCGCAGCACGGGGCGAGGAGACCACGTGTGTCCCAGTGTGGTGTATGAGGCAAGCTGGCCGCTACCTTCCAGAGTTCCGGGAGTCCAGAGCAGGCAAGGACTTCTTCGAGACGTGCCGCTCCCCCGAGGCCTGCTGTGAGCTCACACTACAGCCCTTAAGACGTTTCCCATTTGATGCAGCAATCATCTTCTCCGATATCTTGGTGGTTCCTCAGGCTCTGGGTATGGATGTGCAGATGGTTCCTGGGAAAGGCCCCACGTTCCCAGAGCCCCTGAAGGAACCGGAGGACCTCCTCCGTCTGCGGACCACAGTGGACGTGTCAGCAGAGCTGGGCTACGTCTTCAAGGCCATCACGTTGACCCGCCACAAGCTGGAGGGCAAGGTCCCCCTCATCGGCTTCACTGGAGCACCGTGGACACTGATGACCTACATGATCGAGGGTGGAGGCTCCAACACCATGTCCAAGGCCAAGCGCTGGCTGTATCGCCACCCGGAGGCCAGCCACCGCCTGCTGGTGCAGCTCACGGACGTCATCGTGGAGTACCTGCTGGGACAGGTGGCAGCGGGGGCACAGgcTCTGCAGGTGTTCGAGTCCCACGCTGGCTGCCTCGGTCCGGCGCAGTTTAACGAGTTTGCCCTGCCTTACCTGCGGACGATCGCTCGGAAAGTGAAGGAGAAGCTGAAGGAAGCGGGGCTGGATGACGTGCCCATGATTGTGTTTGCAAAGGATGGGCACTACGCCCTGGAGGACCTCTCTCAGTCTCAGTATGAAGTGGAGAAGATTGGTGAGATGGTGAAGATGATGCTGGAAGGCTTTGGCACCCAGCGGTACATCGCTAACCTGGGGCATGGGCTGTACCCCGACATGGACCCAGAGCACGTGGGCGCCTTCGTGGAAGCTGTCCACTCGCACTCGCGGCAGCTCTGCCAGCTCAAATAGCCAAACCACCAGCCATTGCTACGGCACAGGAAATGTAATGCTTCAAAACAAATCCGATCTAACTTTGCTTTTGCACAGTGAAATCTTGATGCAGAAGATTGTGCTGGCAGCGCTTTGGACATTACACTGAAACTACATGCTGTTACATTAGAGCTACAGGTGAATTGAATTGCTCatgagaaacaaatatattaatagcATTAAagatctatatacatatacacacagacattgtTTTATATCATAGTTAATAAAGACTACTGTTGTTTTGGATTGGACTCGTTCACTGGCAGTATAACAGTTGGTTGTAGCTAAATCATTACCCTATACCTTTAGTTACTTAGCAGGCACTATTTTTTGCAGGTTCCTTTATTTGTAAACCTGAGGACTATAAAGATGGTATAGGGAAAAGCAGTTAGATTAAGAACTTATGATTATTTGGGGCATCATGGTAGGTGATGACAAAATCAAACTGGTATGGGGAATGCAACCTTCAGAGCAGTCTAACACTGGATCATCTTTTCAGTATTAAATCACTGCTGCTCCAGCCTTCTGGAATATCTGTAATACTCTTCTTAAACTGATTGCATTTATATGaatgttaaaaacaatgttctaGGTTGTTTACTTGTACAGACAGGCCTTACCTAGTTGAAATACGTGATGATTTCCATAGGCCGGTGCCATACCATGATCGAAAATAGCCACATTTGCACTGAGAGAACGAAAGCGTGAATCTGTATATTCAAATCTGCCCTGTTTTTGTTACTGGATCAATGGTGACCTGCAAGGACCAGGATGCATCATCACACCAGGCAAAAGTGATCCTAGCCAGCTCTCCATGCAGCTCATCTGTCACAACCTGTATGGGAGTAATGAGATCGAGCTTTACCTGCACTAATGgtgggttgtttttgtttgtttttgtgttgcacCAGCAACACACTCTGGATTGGCTCAGACACC

Function

symbol description
urod Enables uroporphyrinogen decarboxylase activity. Acts upstream of or within porphyrin-containing compound metabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in blood; intermediate cell mass of mesoderm; and presumptive blood. Used to study hepatoerythropoietic porphyria. Human ortholog(s) of this gene implicated in porphyria cutanea tarda. Orthologous to human UROD (uroporphyrinogen decarboxylase).

NR:

description
PREDICTED: uroporphyrinogen decarboxylase-like isoform X2

GO:

id name namespace
GO:0006782 protoporphyrinogen IX biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004853 uroporphyrinogen decarboxylase activity molecular_function

KEGG:

id description
K01599 hemE, UROD; uroporphyrinogen decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005006 True 2172 mRNA 0.50 9 12172167 12178452

Neighbor

gene id symbol gene type direction distance location
AMCG00005007 NA coding upstream 16357 12150488 ~ 12155810 (+)
AMCG00005005 glis1,LOC105895029,LOC106574011 coding upstream 59239 12101060 ~ 12112928 (+)
AMCG00005008 glis1 coding upstream 88666 12066384 ~ 12083501 (+)
AMCG00004983 NA coding upstream 134785 12029197 ~ 12037382 (+)
AMCG00004981 NA coding upstream 147968 12020156 ~ 12024199 (+)
AMCG00005014 NA coding downstream 122889 12301341 ~ 12307027 (+)
AMCG00005016 NA coding downstream 167074 12345526 ~ 12346830 (+)
AMCG00005015 dmap1,LOC107750524,LOC107699933,LOC107548533 coding downstream 170092 12348544 ~ 12368396 (+)
AMCG00005013 LOC107657453 coding downstream 295099 12473551 ~ 12480425 (+)
AMCG00005023 LOC106599374 coding downstream 395801 12574253 ~ 12607617 (+)
G144683 acadm,LOC107094222,LOC102791601,LOC107094221,LOC107584839,LOC107674066 non-coding upstream 495262 11674239 ~ 11676905 (+)
G144682 NA non-coding upstream 498652 11672872 ~ 11673515 (+)
G144681 NA non-coding upstream 499682 11671555 ~ 11672485 (+)
G144680 NA non-coding upstream 500725 11669475 ~ 11671442 (+)
G144668 NA non-coding upstream 594920 11570936 ~ 11577247 (+)
G144804 NA non-coding downstream 15674 12194126 ~ 12194338 (+)
G144805 LOC107679324,LOC107728925 non-coding downstream 17820 12196272 ~ 12196773 (+)
G144809 zswim5,LOC106569256,LOC107728925,LOC107679324 non-coding downstream 61039 12239491 ~ 12242198 (+)
G144811 NA non-coding downstream 77836 12256288 ~ 12257869 (+)
G144908 NA non-coding downstream 438186 12616638 ~ 12616932 (+)
G144677 NA other upstream 508799 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 2156743 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 2421390 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 4438108 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 4479806 7672816 ~ 7692361 (+)
G144940 NA other downstream 602128 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 1976703 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 3201147 15379599 ~ 15384811 (+)
G145932 NA other downstream 5586805 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 6636577 18815029 ~ 18821642 (+)

Expression


Co-expression Network