AMCG00005008 (glis1)


Basic Information

Item Value
gene id AMCG00005008
gene name glis1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12066384 ~ 12083501 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005008
ATGGGAAAGGGTGAAGGGAAGCAGGCGGCCTCAGAATATGAAGACGAAGCTGTACAAGTCTTCCACTCTGCGGTGGCTTGCCAAGCTTTGGGGAAGTTAGCTAACGGAGGCTGCAGCCCCTACTGCCCTGGGAAGAAGGATTCAGGGGATCTGGTGGCGAGTGAGGAGTCCCTGTCTCGATGCCACAGGAGCCTCCCTGGCCACGGGGGGAGCCAGCCTGCAGGGGAGCGCCCGGCAGGCCACTGTGAAGGCCCGCCCCAAAGCCACCGCCTGCCCACAGCCCCACGCTCGGACATCAGgTCCTCCAGTTTTCAAGACACGCTAACATCGGCGAACATTGCCAATGACAGCAGCCACTGTCTAAATGGAGCCGGACGCCTCCCCCAGCACATTAAACAGGAGAGCCCTGGGTGTTACAAAGTGGTATCGGGGGTCCCAGCGAGCCAGGAAATTGCCACGGGCAGGGGTGGGGCCGGGGCGAGAGGGGGCTCGGCTGGCATGCTGCATCCCGAAATAGACCTCGGCCACAATAGATTCTCCAACTCGCTCTCATCGTACTCGTTTAATAATGAAGCGGGCTCCTCCCCGGGTTCATTGTCCGTCGGCAGCTCCCGTCATTCAGCAAGGCTGCTCCACACAGGCAACCTGAAGAGGCGATGCCTCTCTGTGGCCCCGGCAGCAGCTCCGTCTGAGGGAATTGATATCACCGCTATCATCTGCTCTTCCCAGATGTCCCTGGTCGCCTGTGTCAACGGGCTGCGGACTAATTCTCCCGGCATTTCCTCTTACCCCCGGGCCGTCGGCGCCCACCTCGCGGGGAGCCGCAAGCCCCTCAGCCCCCCGCCCTGTTCGCAGACAGAGGAGAGCTGCAGCCTGCCGTCCCCCGGAGCCTGCCTGgtttccttctcctcctcctcctcctcctccgcggAGACGGGGGAGCCAGAGCGCAGCGACTGCGACCAGCAGCTCCCCATGCAGCACCAGCACCCCCCACAGCTGCCGCTGGAGCCGGCCGAGAGCTTCGGCTTCATCATGAACAATATGATGCACCACGGACTGCTGGATGGCTGTCAGAAAGCCAGCTCTTTGAAACAGGAGCCTGTGGATGAGTTTTCACAGAGCGAAGAGGAGCTCTTTCAAcaccaccacctccaccaccaccaccaccgtcATCACCGCAGCCTGCCCCCGCCCTACCACCTGCACCAGTACATCAACCAGAGCCAGGGGGCCTTGCTGCACCTCCAGGGCCAGCCCCAGACTCTGCTGCCCCCCAAGCCCCTGTCCCAGCCCGCCCACCCCTCTGACAGAGATGAGGCGGCCCTGGGGGGCGGCGGTGACAGCCAGGTGTGCCGCTGGATTGACTGCAGCGCTGCCTACACTCAGCAGGAGGAGCTGGTGCGCCACATCGAGAAGGTGCACATCGACCAGCGCAAGGGCGAGGACTTCACCTGCTTCTGGGCCGGCTGCATCCGCCGTTACAAGCCCTTCAACGCCCGCTACAAGCTCCTGATCCACATGAGGGTCCACTCCGGGGAGAAGCCGAACAAGTGCATGCCAAACAAGAAGCCCTTTGATAAGTCTGGGTTCCCTGCCCTCTCCCCTGTCTCCATTGAGGTCAGACTTCTTGCACATCACTGGCGCACCGATAGAGTGTTGCAGGACGTGGGCCTGAAGCGGCCTGAAGCCCCCCACCCTGTCCCAGTCACTTAA

Function

symbol description
glis1 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of transcription, DNA-templated. Predicted to be active in nucleus.

NR:

description
PREDICTED: zinc finger protein GLIS1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005008 True 1716 mRNA 0.62 4 12066384 12083501

Neighbor

gene id symbol gene type direction distance location
AMCG00004983 NA coding upstream 29002 12029197 ~ 12037382 (+)
AMCG00004981 NA coding upstream 42185 12020156 ~ 12024199 (+)
AMCG00004985 NA coding upstream 48979 12015575 ~ 12017405 (+)
AMCG00004982 NA coding upstream 56190 12008911 ~ 12010194 (+)
AMCG00004984 NA coding upstream 59244 12003435 ~ 12007140 (+)
AMCG00005005 glis1,LOC105895029,LOC106574011 coding downstream 17559 12101060 ~ 12112928 (+)
AMCG00005007 NA coding downstream 66987 12150488 ~ 12155810 (+)
AMCG00005006 urod,LOC107674254,LOC107602521,LOC104943951 coding downstream 88666 12172167 ~ 12178452 (+)
AMCG00005014 NA coding downstream 217840 12301341 ~ 12307027 (+)
AMCG00005016 NA coding downstream 262025 12345526 ~ 12346830 (+)
G144683 acadm,LOC107094222,LOC102791601,LOC107094221,LOC107584839,LOC107674066 non-coding upstream 389479 11674239 ~ 11676905 (+)
G144682 NA non-coding upstream 392869 11672872 ~ 11673515 (+)
G144681 NA non-coding upstream 393899 11671555 ~ 11672485 (+)
G144680 NA non-coding upstream 394942 11669475 ~ 11671442 (+)
G144668 NA non-coding upstream 489137 11570936 ~ 11577247 (+)
G144788 LOC104960733 non-coding downstream 15863 12099364 ~ 12192733 (+)
G144804 NA non-coding downstream 110625 12194126 ~ 12194338 (+)
G144805 LOC107679324,LOC107728925 non-coding downstream 112771 12196272 ~ 12196773 (+)
G144809 zswim5,LOC106569256,LOC107728925,LOC107679324 non-coding downstream 155990 12239491 ~ 12242198 (+)
G144811 NA non-coding downstream 172787 12256288 ~ 12257869 (+)
G144677 NA other upstream 403016 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 2050960 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 2315607 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 4332325 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 4374023 7672816 ~ 7692361 (+)
G144940 NA other downstream 697079 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 2071654 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 3296098 15379599 ~ 15384811 (+)
G145932 NA other downstream 5681756 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 6731528 18815029 ~ 18821642 (+)

Expression


Co-expression Network