AMCG00005010 (LOC104932872)


Basic Information

Item Value
gene id AMCG00005010
gene name LOC104932872
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12156580 ~ 12159972 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005010
CAGAAATACGCGTAGAGATTTATAAAGTGTGCGGGAAAATACCAGTGCGCCGCCACCTTTAGTTATTTATGCTTTTTCCGTGTTTATCCGTTGGTTcacatgttttatttgctcACCACAGTGTTTCAATCCTGTTCCGACACGTATCTAGTATTGTGAATAACCCACCTGGTAGTGCGTGGTATTGTCCTTCTACTAGTATATTTGTGGAAATTGTGTATTCAACCTTGTCGCAGTTTCTTGTTTGAGATCAGGGGTTAGTTTTCAGTTCATTCATTATGACCACGATTCAGCCCCGTTTTCAATGAAACTAGTCGATCTGGGCCTAATTGCTGGTTTTAAGAAAAAGCACGTGTTCTGGGAGTCCCGGTGCGATAAAAACCGCTAAAATGCGTGATTACAGAGCATCTCCGATCTTCAAACCGTGCAGTGAGAAAAGCGTGGTGGCCCTGGATGTCTTGCACTAGGCCTTCCTCACATGCTTAGACCAAATCTGTGGCTTTTGCGTATGTTTTGTTTGAGCTCTACCTGTGGTATCTCACGGGACAACTGGCACAAGCGCCGCAAGACTGGGGGCAAGAGGAAGCCCTACCACAAGAAGAGGAAGTATGAGCTGGGCCGGCCTCCTGCAAACACCAAGATCGGACCCCGGCGCATCCACACTGTGAGAGTCCGTGGTGGCAACAAGAAGTACCGTGCTCTCAGGTTGGATGTTGGCAACTTCTCTTGGGGCTCAGAGTGCTGCACCCGCAAGACCAGGATCATCGATGTGGTGTACAACGCCTCCAACAACGAGCTGGTGAGAACCAAGACTCTGGTGAAGAACTGCATCGTCCTGGTCGACAGCACCCCCTACAGGCAGTGGTATGAGGCTCACTACGCTACTCCCCTCGGACGCAAGAAGGGAGCCAAGCTGacccctgaggaggaggagatccTGAACAAGAAGAGGTCGAAGAAAATCCAGAAGAAATACGATGAGCGCAAGAAGAACTGCAAGATCAGCACTCTCCTGGAGGAGCAGTTCATGCAGGGCAAACTGCTTGCCTGCATCGCCTCAAGGCCTGGTCAGTGTGGCAGGGCGGATGGCTATGTCCTGGAAGGCAAAGAGCTGGAATTCTACCTGAGGAAGATCAAGGCCAAGAAAGGCAAATAAATGTACAGAGCTGTTTG

Function

NR:

description
PREDICTED: 40S ribosomal protein S8

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0006412 translation biological_process
GO:0009790 embryo development biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02995 RP-S8e, RPS8; small subunit ribosomal protein S8e

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005010 True 1173 mRNA 0.50 6 12156580 12159972

Neighbor

gene id symbol gene type direction distance location
AMCG00004987 NA coding downstream 136821 12011353 ~ 12019759 (-)
AMCG00004989 NA coding downstream 153376 12001111 ~ 12003204 (-)
AMCG00004990 NA coding downstream 163483 11990650 ~ 11993097 (-)
AMCG00004988 NA coding downstream 171716 11981168 ~ 11984864 (-)
AMCG00004980 acot11,LOC106574016,LOC105895251 coding downstream 242155 11898180 ~ 11914425 (-)
AMCG00005009 hectd3,LOC107688506 coding upstream 3858 12163830 ~ 12172230 (-)
AMCG00005004 zswim5,LOC107602525,LOC107728925,LOC107674240,LOC107714849 coding upstream 23968 12183940 ~ 12199070 (-)
AMCG00005021 NA coding upstream 124422 12284394 ~ 12288518 (-)
AMCG00005017 NA coding upstream 129938 12289910 ~ 12297782 (-)
AMCG00005020 NA coding upstream 138995 12298967 ~ 12300509 (-)
G144826 NA non-coding downstream 127131 12023514 ~ 12029449 (-)
G144821 NA non-coding downstream 146209 12009918 ~ 12010371 (-)
G144672 NA non-coding downstream 584170 11571190 ~ 11572410 (-)
G144659 NA non-coding downstream 650578 11505678 ~ 11506002 (-)
G144657 NA non-coding downstream 655505 11499172 ~ 11501075 (-)
G144877 toe1,LOC107579611 non-coding upstream 142607 12302579 ~ 12302836 (-)
G144878 NA non-coding upstream 142993 12302965 ~ 12303263 (-)
G144879 NA non-coding upstream 143439 12303411 ~ 12303620 (-)
G144880 NA non-coding upstream 144651 12304623 ~ 12304887 (-)
G144893 NA non-coding upstream 207451 12367423 ~ 12368468 (-)
AMCG00005011 best4,LOC103396708 other downstream 202 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 3249986 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 3308805 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 3779579 8353989 ~ 8377001 (-)
G143659 NA other downstream 6373396 5736809 ~ 5783184 (-)
AMCG00005022 NA other upstream 184699 12344671 ~ 12348328 (-)
G145046 NA other upstream 1176237 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 2804442 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 3343110 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 3798732 15958704 ~ 15978855 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036344 rps8b coding NC_007119.7 CM002892.2 18193116 ~ 18200003 (-)
grasscarp (Ctenopharyngodon idella) CI01000004_08875722_08877149 GM11353, RPS8A, RPS8 coding CI01000004 null 8875722 ~ 8877507 (+)
rainbow trout (Oncorhynchus mykiss) G2136952 rs8 non-coding NC_048592.1 CM023246.2 41532973 ~ 41536232 (+)