AMCG00005011 (best4,LOC103396708)


Basic Information

Item Value
gene id AMCG00005011
gene name best4,LOC103396708
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12135378 ~ 12156378 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005011
CTGAGCACTGCACTGTCTAGTGACCCGATCGCTTTCCCCTTGGCGCTCGGGTCTCATTCCAGTGCCAGATTAACCTCTGCTAGCAGAAGGGCTGGGCTTGAAACCTGTAGCTCCTCCCTTTCGAAGGCTgagaacaaatataaaatattcctGACCCCTGAATTGCCATCAAGCTTCGTTGGATGGATGTGCCAAAGCTGTCCGTGCTTTCATGCTCAGAGGGGGGTGGGTCAACAGTGATGGTGATCTTCGCCgtctcctctcttctcttctgcTGCTCGGAGGCCTCCAGCCGGCGCGTGTTGGCTCGGCGGGGCGTGGACTGCTGGCTGCCCTTATCGTCCTCGTCCTCGCTCTCCTCCTCGTTGATGCGTTTGGAGCAGTCCCACTCCTCGCCCTGCCAGGGGTTGGAGTTCACACTGTCTCCGCGCAGCCGCAGCATCTGCAGGCCCCGGTTGCCTCGGCCGAAGTTCTTGAGGCTGATGGCGGGCGAGGCGGCGGCGGCCAGGAAGCGGGTCACCATGGGCGTCTGCATACGTGGGGTTTTGGGGCTCGGCTCCACCGTCTGGTGCTGGGCTGGGTCCTCGCTCATCCTACAGCCCAAACTAGCCTTGGTCATGCCATTGCCCTGTACCTGCTTCCACGACGTGCTCCATGGTGGGGAAGCGCTTGCGGACGCGGGTGCTCACGGAGCGCAGGATGAGCACGGAGGACAGGTTGGCGTAGCGCATCAGGGTGCGCCGGACGATGCGGCCCTTCTCGTCCATGCCGTGCACGTTGGCAGACACCACCATCATGAGCTGGTCTGGCAGGGGGATGCTGGTGTACTGATTCCACCAGCGGTTCACCACCAGGGGGGCAGTGTGAAGCAGATATGCCAGATCATTGAGGTCCCGGTTGCTGCCAAGCAAGGCAGTAGAGGGCCTGAACATCAGCTGGTTCTTGAGGAGAATGTTCTTCTCCCTGTCCCTGGGCAGAGCCACCTCGCAGGGCTTATAGTGGTGGCGCCGGTCCATCATTCCATCAGAGCCATTTCGGTCCACCGTGGACAGCACCAGCACAATACCAGGGCTAACACTAAAGTCAAGGGCAGCAGAATGAAGAGGGCCGTCAGCCCCTTAGACCGGCAAACCTCTGTCTTCTTGATAGACCACACGCTCTTGCCATACAGGTGCTCAGGAGAGGCGCAAGTTAGCCACACGGACACACCCAGAGTGAGGgcgccgagccgagccgagcccagccgagccgagccgagccgagccgccAGCGCCGCGGGAGATGGGCTGCGGGGCTGCGGGGCGAGGAGACACCGCGCACGGCCGCCTGTAGAGCCGGGCTGGGGACCAGGACACACCGACCGAGACGGACAGGACACGGCCATGTCTCCACAG
>TU182156
AACGCTCCTTGCTGAGCACTGCACTGTCTAGTGACCCGATCGCTTTCCCCTTGGCGCTCGGGTCTCATTCCAGTGCCAGATTAACCTCTGCTAGCAGAAGGGCTGGGCTTGAAACCTGTAGCTCCTCCCTTTCGAAGGCTgagaacaaatataaaatattcctGACCCCTGAATTGCCATCAAGCTTCGTTGGATGGATGTGCCAAAGACTGAAGCCGTGCCTAGACCCTGATGAGGAAAAGATCCGGAGCAACACCAGaTGGAGGACACACTCGGTACCATTGAGGTAAAGGCAAAACCAGAGTTCATtgactgtatattttaatacacccattaaaattacattttaaacttactGCTGTTTGTGTTATACTTAACTTTGGGGAGTTACAATTGGGTCAGTTGGGCATCGGTACGGTCTGCTGGGAATGTGAATATCTGAAAGGACTTTGAAGTGAAACCATTAGTATTAGGCATTACAAGATCCTTTGTGTTCTAAAGAACTCCATCACCTCAAGCAAAAGACACTAAGCGACATATAATGATTGAGTCGAGTCAATGATGTACTGACCGTTGCTTCCCAGGTGTTTTGTCCTGCActccaaacccccccccccctgtttAATTTTCAGAAAACCCTTTTCACAGCACGTAAGGCAAAAAGCAGTACAGCATGGCTTCAGGAAAGACTCTGcaaatctttgtgggtgaaggaggaggggagggaatGTTGCCTAACATTAACCTAGAAGGGGTGGTGCAGAGGTGGATAGTGTGGGTGTGTTCATTGTGAGGGATGCTGGACTCTGAAACCCCACAGTAGCCTGCTGTTGCCCCGGTCAGCTGTCCGTGCTTTCATGCTCAGAGGGGGGTGGGTCAACAGTGATGGTGATCTTCGCCgtctcctctcttctcttctgcTGCTCGGAGGCCTCCAGCCGGCGCGTGTTGGCTCGGCGGGGCGTGGACTGCTGGCTGCCCTTATCGTCCTCGTCCTCGCTCTCCTCCTCGTTGATGCGTTTGGAGCAGTCCCACTCCTCGCCCTGCCAGGGGTTGGAGTTCACACTGTCTCCGCGCAGCCGCAGCATCTGCAGGCCCCGGTTGCCTCGGCCGAAGTTCTTGAGGCTGATGGCGGGCGAGGCGGCGGCGGCCAGGAAGCGGGTCACCATGGGCGTCTGCATACGTGGGGTTTTGGGGCTCGGCTCCACCGTCTGGTGCTGGGCTGGGTCCTCG
>TU182157
AACGCTCCTTGCTGAGCACTGCACTGTCTAGTGACCCGATCGCTTTCCCCTTGGCGCTCGGGTCTCATTCCAGTGCCAGATTAACCTCTGCTAGCAGAAGGGCTGGGCTTGAAACCTGTAGCTCCTCCCTTTCGAAGGCTgagaacaaatataaaatattcctGACCCCTGAATTGCCATCAAGCTTCGTTGGATGGATGTGCCAAAGACTGAAGCCGTGCCTAGACCCTGATGAGGAAAAGATCCGGAGCAACACCAGGTAAAGGCAAATCCACAATTATAGTTTGAATAAATGATCATCATGCATGCTGCTCTAATGCTATAAATGCAGAAAGTCTTTACAGTGATGATATCTTTGTCCAGTTCTGCTACTGAATGTAAAGTGCTGACATTTGAGACTCTGAGGAAGACTTGTCTTTTTAAGCATCAACAGAAAACCAAAACTTAAATGTTAACCTTATGTTAGGGGGATTGGTGATTCTAAACTTGTTAAATATTAGGAATTGTAGGGAAATGTATCTAATAGATGGCACAAACATCATTGTTCCAGTGGTGAAAGGATATCTGGAGCCTTTAAATAGACTATATAATTATTGCATTCTCAATTAGAGTTCGGAACTAGCCTGCCTTTCTCAGCCCCTTGATGTGGACATCCATCCTaacaatgtgtatttgtttcagaTGGAGGACACACTCGGTACCATTGAGGTAAAGGCAAAACCAGAGTTCATtgactgtatattttaatacacccattaaaattacattttaaacttactGCTGTTTGTGTTATACTTAACTTTGGGGAGTTACAATTGGGTCAGTTGGGCATCGGTACGGTCTGCTGGGAATGTGAATATCTGAAAGGACTTTGAAGTGAAACCATTAGTATTAGGCATTACAAGATCCTTTGTGTTCTAAAGAACTCCATCACCTCAAGCAAAAGACACTAAGCGACATATAATGATTGAGTCGAGTCAATGATGTACTGACCGTTGCTTCCCAGGTGTTTTGTCCTGCActccaaacccccccccccctgtttAATTTTCAGAAAACCCTTTTCACAGCACGTAAGGCAAAAAGCAGTACAGCATGGCTTCAGGAAAGACTCTGcaaatctttgtgggtgaaggaggaggggagggaatGTTGCCTAACATTAACCTAGAAGGGGTGGTGCAGAGGTGGATAGTGTGGGTGTGTTCATTGTGAGGGATGCTGGACTCTGAAACCCCACAGTAGCCTGCTGTTGCCCCGGTCAGCTGTCCGTGCTTTCATGCTCAGAGGGGGGTGGGTCAACAGTGATGGTGATCTTCGCCgtctcctctcttctcttctgcTGCTCGGAGGCCTCCAGCCGGCGCGTGTTGGCTCGGCGGGGCGTGGACTGCTGGCTGCCCTTATCGTCCTCGTCCTCGCTCTCCTCCTCGTTGATGCGTTTGGAGCAGTCCCACTCCTCGCCCTGCCAGGGGTTGGAGTTCACACTGTCTCCGCGCAGCCGCAGCATCTGCAGGCCCCGGTTGCCTCGGCCGAAGTTCTTGAGGCTGATGGCGGGCGAGGCGGCGGCGGCCAGGAAGCGGGTCACCATGGGCGTCTGCATACGTGGGGTTTTGGGGCTCGGCTCCACCGTCTGGTGCTGGGCTGGGTCCTCG

Function

symbol description
best4 Predicted to enable chloride channel activity. Predicted to act upstream of or within chloride transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of chloride channel complex. Orthologous to human BEST4 (bestrophin 4).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005011 False 1394 mRNA 0.62 7 12135378 12156367
TU182156 False 1233 TUCP 0.53 3 12154125 12156378
TU182157 True 1655 TUCP 0.49 2 12154125 12156378

Neighbor

gene id symbol gene type direction distance location
AMCG00004987 NA coding downstream 115619 12011353 ~ 12019759 (-)
AMCG00004989 NA coding downstream 132174 12001111 ~ 12003204 (-)
AMCG00004990 NA coding downstream 142281 11990650 ~ 11993097 (-)
AMCG00004988 NA coding downstream 150514 11981168 ~ 11984864 (-)
AMCG00004980 acot11,LOC106574016,LOC105895251 coding downstream 220953 11898180 ~ 11914425 (-)
AMCG00005010 LOC104932872 coding upstream 202 12156580 ~ 12159972 (-)
AMCG00005009 hectd3,LOC107688506 coding upstream 7452 12163830 ~ 12172230 (-)
AMCG00005004 zswim5,LOC107602525,LOC107728925,LOC107674240,LOC107714849 coding upstream 27562 12183940 ~ 12199070 (-)
AMCG00005021 NA coding upstream 128016 12284394 ~ 12288518 (-)
AMCG00005017 NA coding upstream 133532 12289910 ~ 12297782 (-)
G144826 NA non-coding downstream 105929 12023514 ~ 12029449 (-)
G144821 NA non-coding downstream 125007 12009918 ~ 12010371 (-)
G144672 NA non-coding downstream 562968 11571190 ~ 11572410 (-)
G144659 NA non-coding downstream 629376 11505678 ~ 11506002 (-)
G144657 NA non-coding downstream 634303 11499172 ~ 11501075 (-)
G144877 toe1,LOC107579611 non-coding upstream 146201 12302579 ~ 12302836 (-)
G144878 NA non-coding upstream 146587 12302965 ~ 12303263 (-)
G144879 NA non-coding upstream 147033 12303411 ~ 12303620 (-)
G144880 NA non-coding upstream 148245 12304623 ~ 12304887 (-)
G144893 NA non-coding upstream 211045 12367423 ~ 12368468 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 3228784 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 3287603 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 3758377 8353989 ~ 8377001 (-)
G143659 NA other downstream 6352194 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 8018964 4109082 ~ 4116414 (-)
AMCG00005022 NA other upstream 188293 12344671 ~ 12348328 (-)
G145046 NA other upstream 1179831 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 2808036 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 3346704 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 3802326 15958704 ~ 15978855 (-)

Expression


Co-expression Network