AMCG00005012


Basic Information

Item Value
gene id AMCG00005012
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12444352 ~ 12454372 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005012
ATGCATTGTCTTTACACTGCTATTGTGAGAGGAAGACCTCTGTGTCAAGCAGGACTCGGACCCTTACTGCTCACACAGCCCGTGTCAGTGTCAGCAGCAGGCATGGCCTCCTTCCCCCCTCAGAGATACAACTTTTTCTTAGTCCTGGATTTTGAGGCTACGTGTGATACCAAACCCATTTACCCTCAAGAGATCATTGAATTCCCAATCTTGAAGCTCAATGGCAGGACTATGGAGATTGAATCCACTTTTCATTCCTATGTGCAGCCTGTGTATCATCCCCAGCTCACACCCTTCTGCACACAGCTGACAGGGATCATCCAGGATATGGTGGAAGGGAAGCCCACACTTCAACACACCCTGCAGGTAtgctgtgacctctga

Function

GO: NA

KEGG:

id description
K18418 ERI3, PINT1; ERI1 exoribonuclease 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005012 True 384 mRNA 0.49 3 12444352 12454372

Neighbor

gene id symbol gene type direction distance location
AMCG00005019 NA coding downstream 99684 12340168 ~ 12344668 (-)
AMCG00005018 NA coding downstream 128700 12310351 ~ 12315652 (-)
AMCG00005020 NA coding downstream 143843 12298967 ~ 12300509 (-)
AMCG00005017 NA coding downstream 146570 12289910 ~ 12297782 (-)
AMCG00005021 NA coding downstream 155834 12284394 ~ 12288518 (-)
AMCG00005029 NA coding upstream 325899 12780271 ~ 12801667 (-)
AMCG00005026 b4galt2 coding upstream 364238 12818610 ~ 12842175 (-)
AMCG00005027 b4galt2,LOC106599387,LOC107700994,LOC107557142,LOC107713046 coding upstream 450093 12904465 ~ 12907715 (-)
AMCG00005025 atp6v0b coding upstream 485143 12939515 ~ 12948955 (-)
AMCG00005034 ptch2,LOC106569083,LOC106599390,LOC107557169 coding upstream 684808 13139180 ~ 13170347 (-)
G144893 NA non-coding downstream 75884 12367423 ~ 12368468 (-)
G144880 NA non-coding downstream 139465 12304623 ~ 12304887 (-)
G144879 NA non-coding downstream 140732 12303411 ~ 12303620 (-)
G144878 NA non-coding downstream 141089 12302965 ~ 12303263 (-)
G144877 toe1,LOC107579611 non-coding downstream 141516 12302579 ~ 12302836 (-)
G144920 NA non-coding upstream 161343 12615715 ~ 12615950 (-)
G144941 NA non-coding upstream 326201 12780573 ~ 12781170 (-)
G144954 NA non-coding upstream 358605 12812977 ~ 12815518 (-)
G145031 NA non-coding upstream 803550 13257922 ~ 13258861 (-)
G145129 NA non-coding upstream 1607349 14061721 ~ 14062111 (-)
AMCG00005022 NA other downstream 96024 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 287974 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 3537758 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 3596577 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 4067351 8353989 ~ 8377001 (-)
G145046 NA other upstream 881837 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 2510042 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 3048710 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 3504332 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 5088774 17543146 ~ 17546332 (-)

Expression


Co-expression Network