AMCG00005013 (LOC107657453)


Basic Information

Item Value
gene id AMCG00005013
gene name LOC107657453
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12473551 ~ 12480425 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005013
ATGGACTTACACCGGGCCGCCTTCAAGATGGAGAGCTCCTCCTATCTCCCCAACCCTCTGGCCTCACCGGCGCTGATGGTGCTGGCCTCCACAGCCGAGGCCAGCCGTGACGCCTCCATCCCCTGCCAACAGCCGCGTCCCTTCGGGGTCCCGGTCTCCGTGGACAAGGACGTCCATATCCCGTTCACCAACGGCTCCTACACCTTCGCCTCCATGTACCACCGCCAAGGTGCCGTCCCGGGCGGGTTCCCCAACCGTGActttcccccctccctcctgcaCCTGCACCCCCAGTTTGCTCCACCCAACCTGGACTGCTCCCCTATCAGCATGCTCAACCACAGTGGGGTCGGCGCCTTCCGGCCCTTCGCCTCGGCCCCCGAGGACCGCGACGGCAGCGGGTACCAGTCTGCGTTCACCCCTGCCAAGAGACTCAAAGGTTGCCTGGAAGCCGACGCCTCGCCCCACCTGCGCTACTCAGACGCGGAGGGGAAGGAATATGACTACGGGGGCGCACAGATCTCCTCCAGCTCTCCGGGCTCCTTAAAGGTCGGGGAGGATGCTGGCAAAAAGATCTTCGCCGTCTCGGGCCTGCTGTCTGACCGCGAGACCTCCTCTAGTCCTGAGGATCGCAATGACCGCTCTGGATTCTGTTTACTCGGGTCAGTCCAATTCCCATGGCCCGAGAGGCAGCCGTGTCACAACGTCACTTTAACAGCAATAAAAGATAAGAAATCAGATATTGCGGCCCGCCGGTGCTGCTGCTATTCCAGCCGTCTCCTCGCCCGCCCGGCCGGCCAGCTCctcggagggagggaggagtcCCTTCTGGCCCCCCGCTCCACCTTCTTCTCGGGGAAGGCAAGGGTGAAATTACAGTAA

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF220-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005013 True 882 mRNA 0.63 3 12473551 12480425

Neighbor

gene id symbol gene type direction distance location
AMCG00005015 dmap1,LOC107750524,LOC107699933,LOC107548533 coding upstream 105155 12348544 ~ 12368396 (+)
AMCG00005016 NA coding upstream 126721 12345526 ~ 12346830 (+)
AMCG00005014 NA coding upstream 166524 12301341 ~ 12307027 (+)
AMCG00005006 urod,LOC107674254,LOC107602521,LOC104943951 coding upstream 295099 12172167 ~ 12178452 (+)
AMCG00005007 NA coding upstream 317741 12150488 ~ 12155810 (+)
AMCG00005023 LOC106599374 coding downstream 93828 12574253 ~ 12607617 (+)
AMCG00005024 NA coding downstream 215887 12696312 ~ 12699461 (+)
AMCG00005028 slc6a9 coding downstream 289314 12769739 ~ 12780452 (+)
AMCG00005030 LOC102231678,LOC103359748,LOC108430294 coding downstream 322860 12803285 ~ 12810937 (+)
AMCG00005031 LOC105920302 coding downstream 470078 12950503 ~ 12954868 (+)
G144811 NA non-coding upstream 215682 12256288 ~ 12257869 (+)
G144809 zswim5,LOC106569256,LOC107728925,LOC107679324 non-coding upstream 231353 12239491 ~ 12242198 (+)
G144805 LOC107679324,LOC107728925 non-coding upstream 276778 12196272 ~ 12196773 (+)
G144804 NA non-coding upstream 279213 12194126 ~ 12194338 (+)
G144788 LOC104960733 non-coding upstream 280818 12099364 ~ 12192733 (+)
G144908 NA non-coding downstream 136213 12616638 ~ 12616932 (+)
G144942 NA non-coding downstream 301745 12782170 ~ 12783644 (+)
G144960 NA non-coding downstream 466757 12947182 ~ 12948973 (+)
G145007 NA non-coding downstream 724915 13205340 ~ 13208217 (+)
G145017 NA non-coding downstream 777292 13257717 ~ 13259076 (+)
G144677 NA other upstream 810183 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 2458127 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 2722774 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 4739492 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 4781190 7672816 ~ 7692361 (+)
G144940 NA other downstream 300155 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 1674730 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 2899174 15379599 ~ 15384811 (+)
G145932 NA other downstream 5284832 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 6334604 18815029 ~ 18821642 (+)

Expression


Co-expression Network