AMCG00005015 (dmap1,LOC107750524,LOC107699933,LOC107548533)


Basic Information

Item Value
gene id AMCG00005015
gene name dmap1,LOC107750524,LOC107699933,LOC107548533
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12348544 ~ 12368396 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005015
ATGAAGACTAAAGCAGATGGAAAACGGAttctaatacatatttttctggaCGTTTTCTTCTTAATAGGAAAAGCATTGTGCCAGAGGTACGCTACACAGTTGAAAATGACGACGGGTGCAGATGTGCGAGATATCCTGGAGCTGGGGGGTGGGGAAATGGATGCGGGTCCAATCAGTAAAAAGGACATCATTAACTCGGATAAGaaaaagtcGAAGAAAtcaactgaaacactgacatttaaaagaCCAGAGGGGATGCACAGAGAAGTCTATGCGCTGCTGTATTCAGATAAAaaAGATGCCCCACCACTGTTACCCAGTGACACGACCCAGGGCTACCGGACAGTCAAGGCCAAGCTGGGCTGTAAACGAGTTCGCCCCTGGAAGTGGATGCCTTTCACAAACCCTGCCAGGAGGGATGGAGCCATATTCTACCACTGGAGGAGAATGGCAGAGGAGGGAAAGGACTACCCATTCGCCCGCTTTAACAAGACTGTGCAGGTGCCCGTGTACTCGGAGCAGGAGTATCAGATGTACCTTCACGATGACGGATGGACTAAAGCCGAGACAGATCACCTCTTTGACCTCTGCAAACGCTTTGATCTACGGTTCATTGTCATCCACGACCGCTACGACCACCAGCAGTTCAGGAAACGCTCCGTGGAAGACCTGAAGGAGCGCTACTACAACATCTGTGCGAAACTGACCAAGATCCGCGCTCCCTCGGGCACCGAGCCTAAGATCTACGTGTTCGACGCCGGACACGAGCGGCGCCGGAAGGACCAGCTGGAGAGACTGTACAATCGCACGCCTGAGCAGGTGGCAGAAGAGGAGTATCTGATCCAGGAGCTCCGCAAGATTGAGACCAGGAAGAAGGAGCGGGAGAAGAAGGCCCAGGACCTGCAGAAGCTCATCACGGCCGCCGACACCACCACGGAGATGCGGCGCGCCGAGCGCAAAGCCACCAAGAAGAAACTTCCTCAGAAACGAGAAACCGAGAAACCGGCTGTTCCTGAGACGGCAGGCATCAAGTTTCCTGACTTCAAATCGGCGGGCGTCACACTTCGTAGCCAAAGGATGAAACTCCCGAGCTCTGTGGGACAGAAGAAGATTAAAGCCATCGAGCAGATCCTCACAGAACAGGCAGTGGATCTGAACCCCATGCCCACGGAGGAGATCGTGCAGATGTTCAATGAGCTGCGCAGCGACCTGGTGCTGGTGTATGAGCTGAAGCAGGCCCACGCCAACTGCGAGTATGAGCAGCAGATGCTGCGGCACCGCTACGAGGCGCTGCTCAAGGCGGGTGGGACCAGCACACCGCTGGGGGAGGGCCTGGGGGCTGACGGACCGCTAGGGGGCGGCACTGAGGACAtcaagggggaggggaaggACCAGATCATCGACGTGGTGGGAGCGCCACTCACGCCCAATTCTGTGACGGAAACGAAGGGAATCGGCCTCCAGTTCTTCCTCTATAAAGAAAGCCAAGAAACTGTgaagagatttaaaaatgcGTCAAGGAGGAACCCAGCTGAGGGAAAGGGCATGGACTGGTCTCTGTTAAACCAGCCACGGCAGCTTCCTAAAGCCTCTCAGCTGTCCTGGGGTTCCCATCCATCAGCGGACAGGCCAGCTGCTCCCTGCCAGACCGCCCGCCCGTCTCTCGAAGAGGAAGTCCTGCCCACACCGCTGGCCACAACTCCAACACTCGCTCGCCACTTCCCGTTTCAGTCTCAACCACACCATCCCCAACACCACCTGGACTCTCACTCGCATTCCAGTCCACCGTTtcatttgctgttgttttttctactcTGAAAGATAAAATGAACCTTGATCAACTGTAATTTACCCTAAAGAAGTGACCTTTTCTGggaatgtataatttttttaaatagcatttaaGACGCATGTATTAAGTGCCGGGGGGAAAGGTAACGTAGCGTTAGACTGACCATCTGTGGGGCAGAGCCTtgatgacttcctgtttatcttgtctctcagtctctgctATAGTGAAGGgggtatgttttaaaatgttttttagatATTTGCCGAAGGAGTGAAAATGGCCCGTCTAGTTTCCAGACTAAACTACCTCTCTGTGTCACAATGGTTCCCTGACCTGTACCCCTCATCATTCAGGCACATGTCTATAAAGGCTAGCACTGAGTAAGCAGGAGAGAGGAGCACACTGGGACAATATGACATCCATCCCTCCAGTTCTCTGCTGAGCCCGAGCCACCTGAGCCTGTCTGTGTAgataagtttgtttttgttcagaaaaatatcatattaaatgtcattttcagCTTGCATGAGTTTTAAAGTTATTTCATCAAGTATAGACTAGTTTCAGAGATCAGAATAAAGTCTTGTCCATGtcatctaataaataaatacatttgacactGA

Function

symbol description
dmap1 Predicted to enable transcription corepressor activity. Acts upstream of or within retina development in camera-type eye. Predicted to be located in nucleus. Predicted to be part of NuA4 histone acetyltransferase complex and Swr1 complex. Orthologous to human DMAP1 (DNA methyltransferase 1 associated protein 1).

NR:

description
PREDICTED: DNA methyltransferase 1-associated protein 1

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0043967 histone H4 acetylation biological_process
GO:0043968 histone H2A acetylation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0032259 methylation biological_process
GO:0006281 DNA repair biological_process
GO:0035267 NuA4 histone acetyltransferase complex cellular_component
GO:0008168 methyltransferase activity molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K11324 DMAP1, SWC4, EAF2; DNA methyltransferase 1-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005015 True 2415 mRNA 0.51 11 12348544 12368396

Neighbor

gene id symbol gene type direction distance location
AMCG00005016 NA coding upstream 1714 12345526 ~ 12346830 (+)
AMCG00005014 NA coding upstream 41517 12301341 ~ 12307027 (+)
AMCG00005006 urod,LOC107674254,LOC107602521,LOC104943951 coding upstream 170092 12172167 ~ 12178452 (+)
AMCG00005007 NA coding upstream 192734 12150488 ~ 12155810 (+)
AMCG00005005 glis1,LOC105895029,LOC106574011 coding upstream 235616 12101060 ~ 12112928 (+)
AMCG00005013 LOC107657453 coding downstream 105155 12473551 ~ 12480425 (+)
AMCG00005023 LOC106599374 coding downstream 205857 12574253 ~ 12607617 (+)
AMCG00005024 NA coding downstream 327916 12696312 ~ 12699461 (+)
AMCG00005028 slc6a9 coding downstream 401343 12769739 ~ 12780452 (+)
AMCG00005030 LOC102231678,LOC103359748,LOC108430294 coding downstream 434889 12803285 ~ 12810937 (+)
G144811 NA non-coding upstream 90675 12256288 ~ 12257869 (+)
G144809 zswim5,LOC106569256,LOC107728925,LOC107679324 non-coding upstream 106346 12239491 ~ 12242198 (+)
G144805 LOC107679324,LOC107728925 non-coding upstream 151771 12196272 ~ 12196773 (+)
G144804 NA non-coding upstream 154206 12194126 ~ 12194338 (+)
G144788 LOC104960733 non-coding upstream 155811 12099364 ~ 12192733 (+)
G144908 NA non-coding downstream 248242 12616638 ~ 12616932 (+)
G144942 NA non-coding downstream 413774 12782170 ~ 12783644 (+)
G144960 NA non-coding downstream 578786 12947182 ~ 12948973 (+)
G145007 NA non-coding downstream 836944 13205340 ~ 13208217 (+)
G145017 NA non-coding downstream 889321 13257717 ~ 13259076 (+)
G144677 NA other upstream 685176 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 2333120 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 2597767 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 4614485 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 4656183 7672816 ~ 7692361 (+)
G144940 NA other downstream 412184 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 1786759 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 3011203 15379599 ~ 15384811 (+)
G145932 NA other downstream 5396861 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 6446633 18815029 ~ 18821642 (+)

Expression


Co-expression Network