AMCG00005017


Basic Information

Item Value
gene id AMCG00005017
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12289910 ~ 12297782 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005017
GGCACACTTGCGGACTGCGCATGCTCACTAAGAGGCTCGTCTGCAGACTCAAAACGCGTGCAAGACCGGCGAAGTCAGACCGCATTAAAACTGCAAACTGTTATTGCACACGGACAAAACTCGTGCATTTGCGCTGCCAGTCCTCGATTATCTTTTGCATTGAATGGGAGCCCGTCCCACTCCGCGCACTGGCGCCACTCCTCCATTGCACCCCGATGACGCGGCGCACTGGCGGGAGAGGTGGCGTGCTGACGCGGGAGTCCGAGTCAACACGCTTCGGCGTGCGAAACAGTGTGCAATTGCAGCAGATGTAGAGACACGTCTGTGTTGCACACATGCAAGCGGATGCATATTTTTAGTCACAGTTGCCATCTTGCACAGACTCGTGAATTGTCTGGACTATAGCTTTATTCCAGAAATGTGTTCTGGCTGCTTCACGTTACAaagtaaaactgcatttttttatttataatgctgcacaatgtgttttaatagCATCGTGCAAAaggctattttttttattgaactaCTTGTTTTTGCAGCGTTACAGATTGCCTGCTGTTGTTCACTTGTATGTGAACACATGTGAGTGCAGTAAAGTGCGTGCAAAGCCGACTGATTAGCTTTACAAGTGTTTCAAAATTGTGCCCTTTCTGTGCAgatcatcacttttcaggatgAGCAGGCTGAGGTCAGCAGTTCAAAATGGGAACAAAGTTGTGTTGGAGAGCGATGAAAACACCAAGAGGTctcaaaagaagaaaacagccATTGCCCCAGCAGTGAAAGAAGAGCCTGCTAGTCTTTCTCTGGCCCAGAATTCCCCTTACCACTTCTTCCAAGCGCTGGATGACATCAGTTCCTTTCGCAGACAGCTGCTGGCATGGTATGACCGGAGCAAGAGGGAGCTACCGTGGAGGACAGCGGCTGTAACGGAGTCAGATGTCAACATCAGGACTTACGCAGtttggGTGTCAGAAATCATGCTGCAGCAGACCCAGGTTGCCACAGTGATTGACTACTACAATAAATGGATAAAGAGGTGGCCAACATTAGAAGATCTTGCTTCAGCTACACTGGAGGAGGTGAATGAGATGTGGGCTGGTCTTGGCTACTACTCCAGAGGCAAGAGATTGCACGAAGGAGCTCAGAAGGTGGTGAGAGAGATGGATGGTCAGATGCCCAAGACTGCAGAAGGCCTGCTGAAGCTTCTGCCAGGAGTGGGCCGCTACACTGCCGGGGCTGTGGCCTCCATCGCACTGGGCCAGgcAACAGGAGCAGTAGATGGGAATGTGATTCGGGTGTTCAGCCGTGTGCGTGCCATCGGCGCGGACAGCACCAGTCCTGCGGTCACTGAGGCTCTCTGGACTCTGGCCAACACTCTGGTGGACCCAGACCGGCCTGGCGACTTCAACCAGGCGCTGATGGAGATGGGGGCCCGAGTGTGCACCCCGAAAGGCCCGGTGTGCTCCCAGTGCCCGGTCCAGATGCATTGCAGGGCCTACAGGAAGGTGGCCGTCAGACAAGAGGAGGGTACCAAAAGACTTCTGGGAAAATCGGCTTTGAAGCCTAGCTCTGCTCCAGATATTGAGGAATGTGTCCCTGCAGGTGGCTGTGCCCTGTGCCTGCCATCCTCCCACCCCTGGGACGGCAGCCTGGGGGTGATGAACTTCCCACGGAAGCCTGTGAAGAAGCCGCCCCGCCTGCAGCGCACACTGACCTGCGTCCTGCACCGGGGGGGCCCCAGGACACAGAGGGAATACTTTCTCGTGCAAAGACCCAGCAAAGGGTTGCTGGCTGGGATGTGGGAGTTTCCAAGCATGCTCCTGGAGGAGGATTCCTCTGAGATGGAGCAGAGGGGGGCATTGCAGGCACAGGTGGAGAAGGTCCTGGCAACTCCGCTGAGCGAGAAGACTGTTCTGCACTACATTGGAGAAGTTGTGCACGTTTTCTCTCACATCCACCAGACCTACGTGGTGTACGGCTGCACTGTGCCCGGGAGGGCCGACTCGAGCCTTGCAGGAGAGGACGAGGGGGCCCTGGCAGCCCGCTGGCTCACCAACTCCGCCTTCCAGGAAGCAGCCGTGTCCACAGCAATGAAGAAGGTATTCAAGCTGTATGAGAAAACAGAAAGCACAGAGTCTCGCAGTGCCaagGATGGCAAGCGTAAAAGAAGCCCTGATGGTAAGAGTGATAAGCCACACAAATCCCAGAAGGTCAAATCTGGAAAGGAACAAAGCAGTGGGACGAAGCAGCTCTCACTCAGTAAGTTCTTTCGGCCTCCAATCAAGCGAGAGGTTGAAGATGGACTTCATTCTTGACCGAACCTGCTCTGGTCTGAAGTCCAGGATTGAAGATGGGGAGCTATTTTCCACAAAACAAGTAATGTTCCTGAATGTTTGGGAGAAAGACATCGACACCTTCCATGAGAAATTCGATTGAGCAAATCCGTCATGGAGCCAAATCACGGCTTTCCCTCTGTGTTGATTGAAACGTGTTCATGAAAGGCAACATTTCCTGACTGGTTTTTGGATACATGACAAGAACTGGCATCATCCAGTGGTTTGCAGTTTTCAATTTAAGGGGGGATTTTATTCTGCGTTCTCATAATTTATCAGTCTCTAAAATAGTTAAAGTGTTGAGCACCTTTTTAACAAAGTTAGTCAGATTTTTCAGGTCTGTAATACATTTATCTCAACAGAAGAAACAATTGCAGAAAATAATGAAGTACTCAGGACTCCATGGTTTTTACTgtgctatttatatataatgattaatGTTTTTAGATGGGCTAGTATACAATACTGTAAATGGTTTTCAAAGGTGTTGGCCTCCTGTGCAAATTCTCATCTAGAGAAGTGTTTGCTGCCGCTCCTGTGAGAGCTAGTTGTGGAGGAGGTTATAATCCTTTGACCAAATGTCCAGATCGAGCAGATGTCCACAACCACTGTCACCCCGATGTGTTACTGCATCCTGTCCTGCTGCTTCACTAAAGTCCCTCACAGCTGGGTGAAGTGTGCTGCTCCACACGGTTAAACCTCCTCTCTCGCATCACTGTTTTGATGTGCTCTACCTAACACCTTTACGAACTGAATGCAattttttattaagatgtattttacGCTTTTATAATGATGCAACATTTTACCATATAATTGTACTACAGAGCCTGCTGAGACAAGCACAGGAAAGTGGGTGTCCCCAGATAGAAAGGCTTTTTAATGACTTATTCAGGTCtttggttttgatttgtgtGAGAGTGGAGCCCCTCATTGCAAAACCCTGACATCCCTttgtcctggagagacacaggaTACAGAGAAGCTATAGTGCGGTCGTCCTCATTCCCCAGGATGAATTTTAAACGAGGTCAAGGCAGCGAGAAAGCTGTGATCTCAAGCCCCTTGCTGCTCTTATCTGGATAATAATCATGTCTGCATTTGgacaccaaaaacaaatgtactagTGACAATGGTATTTGCATTCTAAGCATTAGCTTTGATTCAATGCCCAGTGGTATTTTCTCATCTAAAAGGTGATGGTGGGGGTTggttacaaatatattgttttttagatttgtttttacaatataaatgttaataaaacatgaattgtaTGAAAGGGCTTATATCCTGTatcctttttaatttcaaaaatcAAATGCGG

Function

GO: NA

KEGG:

id description
K03575 mutY; A/G-specific adenine glycosylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005017 True 3666 mRNA 0.49 15 12289910 12297782

Neighbor

gene id symbol gene type direction distance location
AMCG00005021 NA coding downstream 1392 12284394 ~ 12288518 (-)
AMCG00005004 zswim5,LOC107602525,LOC107728925,LOC107674240,LOC107714849 coding downstream 90840 12183940 ~ 12199070 (-)
AMCG00005009 hectd3,LOC107688506 coding downstream 117680 12163830 ~ 12172230 (-)
AMCG00005010 LOC104932872 coding downstream 129938 12156580 ~ 12159972 (-)
AMCG00004987 NA coding downstream 270151 12011353 ~ 12019759 (-)
AMCG00005020 NA coding upstream 1185 12298967 ~ 12300509 (-)
AMCG00005018 NA coding upstream 12569 12310351 ~ 12315652 (-)
AMCG00005019 NA coding upstream 42386 12340168 ~ 12344668 (-)
AMCG00005012 NA coding upstream 146570 12444352 ~ 12454372 (-)
AMCG00005029 NA coding upstream 482489 12780271 ~ 12801667 (-)
G144826 NA non-coding downstream 260461 12023514 ~ 12029449 (-)
G144821 NA non-coding downstream 279539 12009918 ~ 12010371 (-)
G144672 NA non-coding downstream 717500 11571190 ~ 11572410 (-)
G144659 NA non-coding downstream 783908 11505678 ~ 11506002 (-)
G144657 NA non-coding downstream 788835 11499172 ~ 11501075 (-)
G144877 toe1,LOC107579611 non-coding upstream 4797 12302579 ~ 12302836 (-)
G144878 NA non-coding upstream 5183 12302965 ~ 12303263 (-)
G144879 NA non-coding upstream 5629 12303411 ~ 12303620 (-)
G144880 NA non-coding upstream 6841 12304623 ~ 12304887 (-)
G144893 NA non-coding upstream 69641 12367423 ~ 12368468 (-)
AMCG00005011 best4,LOC103396708 other downstream 133532 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 3383316 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 3442135 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 3912909 8353989 ~ 8377001 (-)
G143659 NA other downstream 6506726 5736809 ~ 5783184 (-)
AMCG00005022 NA other upstream 46889 12344671 ~ 12348328 (-)
G145046 NA other upstream 1038427 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 2666632 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 3205300 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 3660922 15958704 ~ 15978855 (-)

Expression


Co-expression Network