AMCG00005020


Basic Information

Item Value
gene id AMCG00005020
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12298967 ~ 12300509 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005020
ATGGGAGGATGCTCCGCACCAAACTGCTCCAATTCCACCACCATCGGGAAACAGCTGTTCCGCTTCCCCAAAGATCCAGAACGAATGAGGAGATGGGACCATTTTGAGGAGAGCCAGTTTGAGGAAATCGCCAGGTCTCCTGCAGGAGGGAGGAAACTGAAGCCCAATGCCATCCCCACTCTCTTTGACGTGCCTGACCCGCCCTCGCCCATCTCTGCCAATCTCCCACCTCTAAAATTAGATCCTGCGGAGAAGGAGCAGACCTTGGTGGATCACGGCTACGCTCGCCGGCAGCCCAAAGGAACCGAAGGAGAGGACAGCGAGGCCAGCAACCAGAAGAGCGAGGAGGAGATCGCCTGCAGGCTGTGTCAGCAGTACAAGGCccagctggagcagcagcagcaacacacgGCCCGTCTGCAAAGAGAGGCTgaagagatgaagaaaaaactgaacaagCTCAACAAGATAGAGAAAGGACTGCAGATGTTCCTGTTTGATGACCAGATCCGCGCCCTGACGCTAGCGAAGCGCTCTCGCCGGGCTGTGTGGTCCCAGGACACGGTGCTGACCGCCCGGCGGATCCGGGGGGCCGTGGGGGTGAAAGGCTACGAGTTCCTCCGGGAGCTGGGGTACCCTCTCCCCTCGTACAGGACACTGTGTAACCGAATGGAACCCAAAATTATGACGCCGCCTACCATGCAAGATGAGTTGGCAGCAATCGGGCTCTGCGAAGTAGTGGACAAAATTACTCCGTTGTCCGAAATGGATTGA

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process

KEGG:

id description
ko04114 Oocyte meiosis
ko04218 Cellular senescence

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005020 True 774 mRNA 0.57 4 12298967 12300509

Neighbor

gene id symbol gene type direction distance location
AMCG00005017 NA coding downstream 1185 12289910 ~ 12297782 (-)
AMCG00005021 NA coding downstream 10449 12284394 ~ 12288518 (-)
AMCG00005004 zswim5,LOC107602525,LOC107728925,LOC107674240,LOC107714849 coding downstream 99897 12183940 ~ 12199070 (-)
AMCG00005009 hectd3,LOC107688506 coding downstream 126737 12163830 ~ 12172230 (-)
AMCG00005010 LOC104932872 coding downstream 138995 12156580 ~ 12159972 (-)
AMCG00005018 NA coding upstream 9842 12310351 ~ 12315652 (-)
AMCG00005019 NA coding upstream 39659 12340168 ~ 12344668 (-)
AMCG00005012 NA coding upstream 143843 12444352 ~ 12454372 (-)
AMCG00005029 NA coding upstream 479762 12780271 ~ 12801667 (-)
AMCG00005026 b4galt2 coding upstream 518101 12818610 ~ 12842175 (-)
G144826 NA non-coding downstream 269518 12023514 ~ 12029449 (-)
G144821 NA non-coding downstream 288596 12009918 ~ 12010371 (-)
G144672 NA non-coding downstream 726557 11571190 ~ 11572410 (-)
G144659 NA non-coding downstream 792965 11505678 ~ 11506002 (-)
G144657 NA non-coding downstream 797892 11499172 ~ 11501075 (-)
G144877 toe1,LOC107579611 non-coding upstream 2070 12302579 ~ 12302836 (-)
G144878 NA non-coding upstream 2456 12302965 ~ 12303263 (-)
G144879 NA non-coding upstream 2902 12303411 ~ 12303620 (-)
G144880 NA non-coding upstream 4114 12304623 ~ 12304887 (-)
G144893 NA non-coding upstream 66914 12367423 ~ 12368468 (-)
AMCG00005011 best4,LOC103396708 other downstream 142589 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 3392373 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 3451192 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 3921966 8353989 ~ 8377001 (-)
G143659 NA other downstream 6515783 5736809 ~ 5783184 (-)
AMCG00005022 NA other upstream 44162 12344671 ~ 12348328 (-)
G145046 NA other upstream 1035700 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 2663905 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 3202573 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 3658195 15958704 ~ 15978855 (-)

Expression


Co-expression Network