AMCG00005021


Basic Information

Item Value
gene id AMCG00005021
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12284394 ~ 12288518 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005021
TGGAAGAGGCCCGAGTCGAGCCTGGCTGCCCCCGTCCCAGGAGCGAGGCGCAGAGACATGCCGGGGCCCTGGACCCCGCTGCTGGCCGTCCTGCCGGGGCTGCTGTGGGCGGCGGTGTCCGCAGAGCAAAGCAACTCCACCGCTGTCTGCCGGCCGGCCCCTCGCTGGGAAATCGCCGGCGCGGCCCCCATGGAGGCGCTGCTGGGCCGGGTGGCCGTGGCCTCCCGGTTGGGAGGCCTGCGTTCCAAGCTGGCCCGGAGCGGGCTGACGGAGGTGGGCTTCCTCATCGTGAACGAGAAGGACCCCTACTCCAGAGCCATGTTCTGGGAGCTGAAGAGGAGAGCACCGGAGGGGATCCCTGTCTACCAGCAGGCCCTGGTGCAGGCAGATGTCTGGGAGATCCTGCAGGGAGACAAGGATGACTTTCTCATATATGACAGATGTGGTCAGCTGACATTCCACATAGTCCTGCCCTACAGCTTCCTTCACTTCCCCTATATAGAAGCTGCTATTCGCGCTACCTACCTCACAGACATCTGTGGAAACTGCTCTGTGCCTTCAAATTTAACCCAAACTCTGGGATTAAATCACACTCGGGTTTCTAACCAAAGTGATCAAACCACAAATGTTACCACAACTGGACAGCCTCCTAGCCCATTAACAGCAGGGGTCTCGGAGGAAGTTGAGCAATCTGAGGGGGCAGAGAACAGCCACCACTCGCACCATGTGCAAGGCCAAACACACAGCCACCACCCGGGAGGAGGGCCACCCCATCCCAACCAAAACCCCCACTACCACTATGACCACGGCCACCACTAGCTGGCACGTCCATTGAGACAGCAGGGATGTATTTTCAATCCCAGCTTCTCGCGTCTTACTCTGCTTAACTGGGTGCCAGCAATCCAGGCACACTGAGACCCTGTCTACCTTCTCGATCAACAATTCAACGACGAGAACAATCAAAACgactttttctttctgtattccacaagttatatttatattttgtcttttgttgtttgAAATGGTGACCCTTGCTGCAGTTTGCGATGTAATATTTGTAACACCCACACCGCTTCCATTATTTACTGTTACACACCTGGCTTATTCCCGTaaaaaagttagtttttttctttttcattctatcAAACTAAAGGCATGACTGTTTCACTTGCTGTAGGGATGCACATGATAATACAGTACAgccatttacatttcaatgatGCATACTAGAGCTTAATGTCTCTTTACAAGCAGATCTGCAGGCATACTGCATATTCCCCATTCATGCTATCTATTTTCTAAATTATCCCCCTCCAACTAAATTGAGAAATTCAAGGTTCGATCATCTTGAAGTGTTTTACGCTGAAGCCTGTCAGTCCCGTAAATTAGTGCTCTCGTCTCTCTGATCTTGGCCTCATTCCCTCCCTAAGACATTCATCCTTTTATGCCACATGTCTGTTAGGTTCTCTCCACTTATCTGCTCCGCTGCACTAAATGAAATCTGCAGTTCAAACTACAGAGTGGCAGCTACAGACTGATATTGTGCAGCAGAGAGGAGTGGCTGGAGATGAACCTGTGACACCAACTCTGAAACACAGTTCAGACTGAGGCAGAGAATGTGTTCCTCAAGCCAAGGGTTTTGTGCCTAGCAGGTTTCAAATGTAATAACACCTAGgtcttgtgtgtgtatctatatatatcacCATTATCTCTGCCTTTCTCAATTTTAAATCTAGACATGCAACCCTATACTAATTTGAAATGTGACTATTTGTTACCTATTTAAAACGTGTTTGCATGTTATACAATACTTGTTTTTTGATAGGACAAACATTACTTATTAAAGTGGTTTTATTTGCCAAGCAGATATTCTTTTACagtgttattataatttaatagaaGCTATTATTCCCAAAGAATGCCCATTTTACTTTACAGACCCCACGTGGAGAGAATCTTGCACTGTTCTGTTATGTAGTGTGATTAACTAGGTCAGTAATGCTAGCAGCAGATCTCTGCATATAGAGtagggttaaaaaaatatatcaatgcatctcatttaaaatattcagtttttatgtctttcattagttttatgTACTGAAGCTTGTTCTAAACTGTCTGAATTCCTTCACCTCAAACAGAAAGGGGACCATGAGAGTGATGGAGGTGAAATGTACACTCATCAGAGGAAGAATAAACCCTTCCACCGCCTGCTGTGTAATAGACAGGGTGGTCTTCGGCCCATTCGAGCTCGTCGCATCTCCATACCGAGTAAATGTTACTGCTGGATGCAAAAGAAGTGTGGGAATACAAATATGATGTCgtctgatgcatttttttttttataataccaCCATGCAATCCACTTGATCATAACAGTACATTTCTATAGGATTCCACTGGCCGTGCTGGTAATGAGAAACAATGAGTGATGGGCCAGACTGGTACCAGAAAGTGAGTGACTGATCACTGTGTGCTTAATGCAGGAGTGTGCAAACACATTAAacctaggttttttttttttaatgacacgGACCATTTTGTTTGTAGACATGCCTTGGATGATGTGTAGTATACACGGATGCATATGTGTCAACTCGTAAAGAAATCTGCAACAATGACAATGTCTAGTGCGGAGTCGCAAACACCGACGCAGTCCGAGCTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005021 True 2673 mRNA 0.46 5 12284394 12288518

Neighbor

gene id symbol gene type direction distance location
AMCG00005004 zswim5,LOC107602525,LOC107728925,LOC107674240,LOC107714849 coding downstream 85324 12183940 ~ 12199070 (-)
AMCG00005009 hectd3,LOC107688506 coding downstream 112164 12163830 ~ 12172230 (-)
AMCG00005010 LOC104932872 coding downstream 124422 12156580 ~ 12159972 (-)
AMCG00004987 NA coding downstream 264635 12011353 ~ 12019759 (-)
AMCG00004989 NA coding downstream 281190 12001111 ~ 12003204 (-)
AMCG00005017 NA coding upstream 1392 12289910 ~ 12297782 (-)
AMCG00005020 NA coding upstream 10449 12298967 ~ 12300509 (-)
AMCG00005018 NA coding upstream 21833 12310351 ~ 12315652 (-)
AMCG00005019 NA coding upstream 51650 12340168 ~ 12344668 (-)
AMCG00005012 NA coding upstream 155834 12444352 ~ 12454372 (-)
G144826 NA non-coding downstream 254945 12023514 ~ 12029449 (-)
G144821 NA non-coding downstream 274023 12009918 ~ 12010371 (-)
G144672 NA non-coding downstream 711984 11571190 ~ 11572410 (-)
G144659 NA non-coding downstream 778392 11505678 ~ 11506002 (-)
G144657 NA non-coding downstream 783319 11499172 ~ 11501075 (-)
G144877 toe1,LOC107579611 non-coding upstream 14061 12302579 ~ 12302836 (-)
G144878 NA non-coding upstream 14447 12302965 ~ 12303263 (-)
G144879 NA non-coding upstream 14893 12303411 ~ 12303620 (-)
G144880 NA non-coding upstream 16105 12304623 ~ 12304887 (-)
G144893 NA non-coding upstream 78905 12367423 ~ 12368468 (-)
AMCG00005011 best4,LOC103396708 other downstream 128016 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 3377800 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 3436619 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 3907393 8353989 ~ 8377001 (-)
G143659 NA other downstream 6501210 5736809 ~ 5783184 (-)
AMCG00005022 NA other upstream 56153 12344671 ~ 12348328 (-)
G145046 NA other upstream 1047691 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 2675896 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 3214564 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 3670186 15958704 ~ 15978855 (-)

Expression


Co-expression Network