AMCG00005029


Basic Information

Item Value
gene id AMCG00005029
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 12780271 ~ 12801667 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005029
ggaaacaggaaacaaatgtTGCAAGGACCAGAGACTTTGCTTGAGTACACAGTGGTTACACTCAACAGATGAGGAAGGTTCATGGCTGCTCTACCTGATGATGGAGATTGCACCTTCATGGAGAGCTATGAACCTCTTCAGTCTTTGTGGAAGTTAGTGGAGGAACATGTGCCTGAATCCGAGCTTCCAGTAGTCAGGAGTGTCCTGGGAGATGCCATGGTTGACCTCAGCTTAGAGATGCACTCAGAGGTGGAAATGTGGTTGCAAATCTGGCAAGACTTAAAATCTAACCATGAAAGAGTGTCCAAGGCCTCAGCATCCCGGACTGTCCTCGCTGACCCCCCTGCCATCAAAGAGATGCTGAAGCAGGAGATACATCTACTCCTGCTGAATGTTCGAGAGAAAGCCTCTAAACAGGGCAGGGATGAAAACAAGGCTCTGTCCCTTTATAGTCCTGGCATTGTTAGCTATGTGATGGGCAGCAGTAACCCAGGCCCTCAGCTGGACAGAGCAGGAGGTGCCAGGAGTCCTCAAGGCGACGGAGATGTGCGGCCTGCTTCCCGTACCTCCACAGGCTCCAGTTTTGAGGATGAAATTGAAGCCATTAAAGACAGATTAAATGTTACCCAGATTGACGAGGTTGTAGCACATCTGAAATCTGTCCTAAAAGAAGAGTGTGATGCTCTGGGGAAGGATGTGGAGTTTCTACAGAAGTGTGTGGCGCACGAACACCAGCACAGCGCCAACCAGACTGTGAGAGAGCCCTCTGTTGCAGAACACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005029 True 783 mRNA 0.50 8 12780271 12801667

Neighbor

gene id symbol gene type direction distance location
AMCG00005012 NA coding downstream 325899 12444352 ~ 12454372 (-)
AMCG00005019 NA coding downstream 435603 12340168 ~ 12344668 (-)
AMCG00005018 NA coding downstream 464619 12310351 ~ 12315652 (-)
AMCG00005020 NA coding downstream 479762 12298967 ~ 12300509 (-)
AMCG00005017 NA coding downstream 482489 12289910 ~ 12297782 (-)
AMCG00005026 b4galt2 coding upstream 16943 12818610 ~ 12842175 (-)
AMCG00005027 b4galt2,LOC106599387,LOC107700994,LOC107557142,LOC107713046 coding upstream 102798 12904465 ~ 12907715 (-)
AMCG00005025 atp6v0b coding upstream 137848 12939515 ~ 12948955 (-)
AMCG00005034 ptch2,LOC106569083,LOC106599390,LOC107557169 coding upstream 337513 13139180 ~ 13170347 (-)
AMCG00005038 eif2b3,LOC106569082,LOC107558289 coding upstream 382008 13183675 ~ 13218177 (-)
G144920 NA non-coding downstream 164321 12615715 ~ 12615950 (-)
G144893 NA non-coding downstream 411803 12367423 ~ 12368468 (-)
G144880 NA non-coding downstream 475384 12304623 ~ 12304887 (-)
G144879 NA non-coding downstream 476651 12303411 ~ 12303620 (-)
G144878 NA non-coding downstream 477008 12302965 ~ 12303263 (-)
G144954 NA non-coding upstream 11310 12812977 ~ 12815518 (-)
G145031 NA non-coding upstream 456255 13257922 ~ 13258861 (-)
G145129 NA non-coding upstream 1260054 14061721 ~ 14062111 (-)
G145130 NA non-coding upstream 1260677 14062344 ~ 14062624 (-)
G145131 NA non-coding upstream 1261198 14062865 ~ 14063123 (-)
AMCG00005022 NA other downstream 431943 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 623893 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 3873677 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 3932496 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 4403270 8353989 ~ 8377001 (-)
G145046 NA other upstream 534542 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 2162747 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 2701415 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 3157037 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 4741479 17543146 ~ 17546332 (-)

Expression


Co-expression Network