AMCG00005033


Basic Information

Item Value
gene id AMCG00005033
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 13111217 ~ 13119024 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005033
CATCCCTCACGATTGTCCCGGCATCCTTTATCGTGCTTCCGGTGACGACTTTTAAAAGTTTGGCGGTTGGATACAGGCTTATactagattattatttttagggggaaCATTTGCAATATAGCTTCGcagttttatatgtttttaaaatgaatccagCTATTATAAACTTCATAGCTCCGGGGCTGTCTGTTAAGATTGCGCGAAGTGACGGACGGGTGCACTGCGCCAGCATCACCGAGGTCAACCAGAAGAAAGGCGCCGTGACGGTGGAGTGGGAGGAGAACTCCAACACCAAGGCCAAGGGGGTGGACTTTGGGGAATTATGGAATCTGAACCAGGGGCTGTTGGAGCATCTGATGGCCAGTTTCCAGCCACAGACGAcacctttaaaagaaaatgttggatTGCCAAAATTAGAACGCAGAACTCAGTTGTCAAAAATACCAGCTCCACCCGAATCAATTCGTAacaccaggaaaaaaaatgggGCAAAACTAGCAGTCCTGCCGCAAGTTCATGAAGACAGCATGGAGGCAGATCCGTTACCGTCTTTATCCAAGGTCTATGGTTCTGCCAATTCGGCGAAACGGAAGTCCACCGTTGTACTCGAGGTtgaaaaaatgaagaacaaaagaGAAGTGACCCAAGCCAAACACTCTCAGATACGAGCCAGGAGGGCAAAGgATGGCGATATGAACAGAGCTAACTGGGAGTTCCTGAGGATGATTCGGGAATATCGAGAGACTCTAGAATGCAAACCCATCAACTTAACAGACCCAgTTGAAAATCAtagaatttgtgtgtgtgtccggaAACGGCCACTTAATAAACAAGagaATGCAAGGAAGGAAATCGATGTGGTTTCAGTACCTGGGAAGGGAATGCTGCTTCTGCATGAACCAAAGCAGAAAGTGGATCTCACAAAGTACCTGGAGAATCAGATCTTCAAATTTGACTACTCTTTTGATGAAACTGCCACAAATGACATTGTGTACAGATTCACTGCCAAACCACTTGTTCAGACTATTTTTGAGGGTGGCATGGCAACCTGCTTTGCATACGGTCAAACTGGGAGTGGAAAAACTCACACTATGGGTGGTGACTTTTCTGGGAAAACCCAAAACAGCTCTGCAGGAATATATGCGTTTGTAGCACAGGATGTTTTTTCACTTCTGAGCCAGCGGAAGTATTCCAATCTCGAACCACACGTGTCATTTTTTGAAATCTATAATGGCAAGGTGTTCGATCTGTTAAACAAGAAAGCAAAACTGCGCGTGTTGGAAGATGGCAAGCAGCAAGTCCAGGTCGTTGGTCTGCAGGAAGTGTACATCTCATCTGCTGAAGACGTCATCAAAATGATCGATATCGGTAGCGCTTGCAGGACCTCAGGACAGACCTTTGCCAACGCGAATTCCTCCCGCTCTCACGCAGTTTTGCAGATTATTCTGCGGAAGGGGGGAAAGCTGCACGGCAAGTTCTCCCTGGTTGATCTGGCGGGGAATGAGCGCGGTTCTGATGTGAGCAGCGCTGACCGACAGACTCTATTGGAAACGTCAGAAATTAACCGAAGTCTTTTGGCTTTAaaggaaTGCATTCGAGCCCTTGGACAGAACCAGGTCCACACCCCCTTCAGAATGAGCAAACTGACTCAGGTTCTGAGGGACTCTTTCATAGGGGAGAACTCGAGGACTTGCATGATTGCAATGATTTCCCCTGGTATGGCCTCCTGTGATTATACACTGAATACTCTTCGATATGCAGACAGAGTAAAGGAATTGAATGGAACATCAAACGGAAACGAGTCGAGTGAAAAGGATGAGATGGAAGTGGACGAGTCCAGTCTTTCAGATGACACTGTCTTACCAACTTCAATGTCCAGTATTTACGAAGCGATGTCTCAAGTCACAGAAACGGAAGAAAAGGTTTGGGAAGAATTCCAAGACATCATCCAGCAAGGATCTGAAATCTTGAAGATGGCAGAAGAGCCAGATTATGACTTATCAACAGTTGTGGCTCACCTGAAGGAATTtttgaagagagagaaatcacTACAAGATAACGTGACTGCTTTAGAGTCTGCAATAGAAAAAGAGCAGGAGGCGAGGAAGCGACATGACAATGGACCTCGCTGAAGCCCAACaactttctgttttgtcttttcttgcagatctttgttttatttgtgtgtgatgtAATCTGTTTCcttatattttatgattgagACTAGAATCCAAATTCTATCCAGGATCGGTCTTTCTCTTGTATGTAGAGTGGTAGTTTGTATACTGTGATTGTGCATATCTCTTAACCATTGGTGGATGTaaatttacattcaaaatgtaaaattttaaaGTTGAGaatgtatttacaatgtttaattgttaCATTGTTGCTTAATGATTTATGTTGCAAGCAGCATTAAACATTGCTTGAATACCGAAATGGCAGAGAACATGCAAAGACAATGTACACAAGTTTTTGCACAtaacattatatttgtaaactCAAGCCAACCTTTGTATATCttgtaataaaatgatttttgCAAATTTGA

Function

GO: NA

KEGG:

id description
K10393 KIF2_24, MCAK; kinesin family member 2/24

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005033 True 2554 mRNA 0.43 20 13111217 13119024

Neighbor

gene id symbol gene type direction distance location
AMCG00005032 kiss1ra,LOC108411985,LOC106569085,LOC105898653 coding upstream 82421 13018537 ~ 13028796 (+)
AMCG00005031 LOC105920302 coding upstream 156349 12950503 ~ 12954868 (+)
AMCG00005030 LOC102231678,LOC103359748,LOC108430294 coding upstream 300280 12803285 ~ 12810937 (+)
AMCG00005028 slc6a9 coding upstream 330765 12769739 ~ 12780452 (+)
AMCG00005024 NA coding upstream 411756 12696312 ~ 12699461 (+)
AMCG00005035 NA coding downstream 176750 13295774 ~ 13298682 (+)
AMCG00005043 NA coding downstream 219075 13338099 ~ 13363552 (+)
AMCG00005057 NA coding downstream 493582 13612606 ~ 13641696 (+)
AMCG00005058 NA coding downstream 525502 13644526 ~ 13647823 (+)
AMCG00005052 brinp2,LOC106569071,LOC105018207,LOC107720848 coding downstream 803203 13922227 ~ 13941911 (+)
G144960 NA non-coding upstream 162244 12947182 ~ 12948973 (+)
G144942 NA non-coding upstream 327573 12782170 ~ 12783644 (+)
G144908 NA non-coding upstream 494285 12616638 ~ 12616932 (+)
G144811 NA non-coding upstream 853348 12256288 ~ 12257869 (+)
G144809 zswim5,LOC106569256,LOC107728925,LOC107679324 non-coding upstream 869019 12239491 ~ 12242198 (+)
G145007 NA non-coding downstream 86316 13205340 ~ 13208217 (+)
G145017 NA non-coding downstream 138693 13257717 ~ 13259076 (+)
G145039 NA non-coding downstream 196354 13315378 ~ 13317852 (+)
G145067 NA non-coding downstream 454218 13573242 ~ 13573460 (+)
G145147 NA non-coding downstream 1085110 14204134 ~ 14204512 (+)
G144940 NA other upstream 330047 12780580 ~ 12781170 (+)
G144677 NA other upstream 1447849 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 3095793 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 3360440 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 5377158 7718273 ~ 7734059 (+)
AMCG00005060 LOC106599426 other downstream 1036131 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 2260575 15379599 ~ 15384811 (+)
G145932 NA other downstream 4646233 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 5696005 18815029 ~ 18821642 (+)
AMCG00005232 dock7 other downstream 6356115 19475139 ~ 19530453 (+)

Expression


Co-expression Network