AMCG00005035


Basic Information

Item Value
gene id AMCG00005035
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 13295774 ~ 13298682 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005035
ATGAGTATCCCGTACTACAGAAACAGATTTTTCGCTGGAAGCAACGGGTTTGCCATAGTGACAAAGTGCAGGGAGGTGGCAGCAAGCCCAGTCTTGCACTGCTTTGAAGCAAGTCTTTGGGTAGATATGACCACCAAGCAACTCCCACTATCGCAGGAGACTCTAGCACAGTTCAACCAGGCTCTGGCACTAGAACCAGGAGGGGCATCAAGGAAGCGGGCCGGATCCATCTCGACCAGGCGGAGCTCCCAGTCTGGAGATCTGCACCACACCAAGCCCTTGCTGCTCCTCAGGAATGCAGAGTCCAGCCGGCCCACTGCCCCTTCGCGCCGGAGCTCTGTCTTCAGTAACCTCAACTCCCCATTCGCCCGCAGAGAGTCCTTCCCCATGGGCAGGCGGCTCTCCATGGGGCCTTGGATGCACTGCGGCCGGGTCAGCTTCTCTGGACTGCCCTTGCACCAGCCAGTTCCGGAGATCCAGTTCGAAAACACGTACAAAACAAAACCGGACGAGGGCTGTCACTTCAATAGCGCCAAATTTCAGGGGCTGCTGGAAGCCACCCTAGACAGCTACCTGGGTGAGAGCGGCTACAGCCCAGTCACCTGTGGCCAGCTGTCACAGAATCTCTCTGATCTCATCCGGAGCAAGGCCAAGGACATTACCCCGCCCCGCTATAAGCTGGTGTGTCTGGTCATCCTTGGCCAATGCAATGACCAGGGGGTTCAGGTAGCCAGCCGCTGCCTCTGGGACACAGAGAGCGATAACTTTGCGGTCGCTACTGTCCAGAACTCCTCTATTTTTGCCGTTGCCTCAGTCTACGGATTGTATTGTGAATGATGGTGAACACATTACAAGAATAAGTCAAGACCCAGGTATTGTAGTATATATTCAAGACTAGATATATGGggtatatatatagagatatatatatttattgttcttCATACTCTGCCTACCttaacaatattataatatgCACAACCCCTTCAGGACTAAGAAACAAGAATGCAGAAGAAAAACGTTATTTTTCCACAAATGTAAAATCCATCATCTTGTGTTTCTGCCGAGTAGAAACTAAACAATTTATCTTAGGTTATCTTACTTATATTAGTAtagatcctttttttttttaagtacatgccttttatttaaagtgacttATTTGCACCTCCTACCATCAGTATGCTGTTTCAAGTTAAATGCcaataaaatggaaagactGATAGAAAGTGTGCAGTTTCCTTCTCCTAACTTatctacttttgtttttagtagTTTTAGTTTAAGAACCTGATCTAATCAGGTGAAGC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005035 True 1310 mRNA 0.47 3 13295774 13298682

Neighbor

gene id symbol gene type direction distance location
AMCG00005033 NA coding upstream 176750 13111217 ~ 13119024 (+)
AMCG00005032 kiss1ra,LOC108411985,LOC106569085,LOC105898653 coding upstream 266978 13018537 ~ 13028796 (+)
AMCG00005031 LOC105920302 coding upstream 340906 12950503 ~ 12954868 (+)
AMCG00005030 LOC102231678,LOC103359748,LOC108430294 coding upstream 484837 12803285 ~ 12810937 (+)
AMCG00005028 slc6a9 coding upstream 515322 12769739 ~ 12780452 (+)
AMCG00005043 NA coding downstream 39417 13338099 ~ 13363552 (+)
AMCG00005057 NA coding downstream 313924 13612606 ~ 13641696 (+)
AMCG00005058 NA coding downstream 345844 13644526 ~ 13647823 (+)
AMCG00005052 brinp2,LOC106569071,LOC105018207,LOC107720848 coding downstream 623545 13922227 ~ 13941911 (+)
AMCG00005050 brinp2,LOC106569071 coding downstream 658020 13956702 ~ 13964422 (+)
G145017 NA non-coding upstream 36698 13257717 ~ 13259076 (+)
G145007 NA non-coding upstream 87557 13205340 ~ 13208217 (+)
G144960 NA non-coding upstream 346801 12947182 ~ 12948973 (+)
G144942 NA non-coding upstream 512130 12782170 ~ 12783644 (+)
G144908 NA non-coding upstream 678842 12616638 ~ 12616932 (+)
G145039 NA non-coding downstream 16696 13315378 ~ 13317852 (+)
G145067 NA non-coding downstream 274560 13573242 ~ 13573460 (+)
G145147 NA non-coding downstream 905452 14204134 ~ 14204512 (+)
G145251 NA non-coding downstream 1378027 14676709 ~ 14677597 (+)
G145268 NA non-coding downstream 1479556 14778238 ~ 14791127 (+)
G144940 NA other upstream 514604 12780580 ~ 12781170 (+)
G144677 NA other upstream 1632406 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 3280350 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 3544997 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 5561715 7718273 ~ 7734059 (+)
AMCG00005060 LOC106599426 other downstream 856473 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 2080917 15379599 ~ 15384811 (+)
G145932 NA other downstream 4466575 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 5516347 18815029 ~ 18821642 (+)
AMCG00005232 dock7 other downstream 6176457 19475139 ~ 19530453 (+)

Expression


Co-expression Network