AMCG00005036 (mrps14,LOC107658361)


Basic Information

Item Value
gene id AMCG00005036
gene name mrps14,LOC107658361
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 13315390 ~ 13317852 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005036
tatgtaactAACCTTAGGTCGTTCACCACTGCTTGCCCTGTGGTGGGATTTgctttagttttaaataaagttgtCTTCTTCAATATTTCAACATGGCGGCCTCCATGCTGGGTCGGATTGTCAGTTCGGGGTTTGGGATTTTACACTCTTCGTTTGGGAGAACGACTCAGgCCTTGAGGAGTGCCACCGCGAATGTGGAGCAGGTCAGAGGTTACTATGTTAACTGGAGGATGGTCCGAGATGTGAAGAGAAGGCAGATGGCATTTGAATATGCCAACGAGAGACTCCGGATTAATGCTATCAGGAAAAACAACATCTTACCAAAAGAGCTGCAGGAGGTTGCTGATAAAGAAATCGCCGCTCTGCCGCGGGACAGCTGCCCTGTGCGAATTCGGAACAGGTGTGTGATGACATCACGGCCACGGGGGGTGAAACGCAGGTGGCGTCTGAGTCGTATTGTTTTCCGCCACCTCGCCGACCACAATCACATGTCCGGTGTCCAGAGGGCAATGTGGTAACGGACTTCACGTGGAGGGGGTCACACAAATATTGGACTAATGGAATCGCCGGACCCCTTCCTTCTTGACTTTTCAACTGTGCTGCATCGCCTATTACtgcttcaataaatacatgtatcaaaa

Function

symbol description
mrps14 Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 38. Orthologous to human MRPS14 (mitochondrial ribosomal protein S14).

NR:

description
PREDICTED: 28S ribosomal protein S14, mitochondrial-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02954 RP-S14, MRPS14, rpsN; small subunit ribosomal protein S14

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005036 True 641 mRNA 0.49 3 13315390 13317852

Neighbor

gene id symbol gene type direction distance location
AMCG00005039 NA coding downstream 1813 13309544 ~ 13313577 (-)
AMCG00005037 NA coding downstream 8430 13301123 ~ 13306960 (-)
AMCG00005041 NA coding downstream 19971 13263243 ~ 13295419 (-)
AMCG00005040 NA coding downstream 52522 13260215 ~ 13262868 (-)
AMCG00005038 eif2b3,LOC106569082,LOC107558289 coding downstream 97213 13183675 ~ 13218177 (-)
AMCG00005042 NA coding upstream 49079 13366931 ~ 13367263 (-)
AMCG00005048 NA coding upstream 73857 13391709 ~ 13429286 (-)
AMCG00005045 rfwd2 coding upstream 263609 13581461 ~ 13601804 (-)
AMCG00005044 LOC100380755 coding upstream 354891 13672743 ~ 13684709 (-)
AMCG00005049 astn1 coding upstream 387374 13705226 ~ 13710482 (-)
G145031 NA non-coding downstream 56529 13257922 ~ 13258861 (-)
G144954 NA non-coding downstream 499872 12812977 ~ 12815518 (-)
G144941 NA non-coding downstream 534220 12780573 ~ 12781170 (-)
G144920 NA non-coding downstream 699440 12615715 ~ 12615950 (-)
G144893 NA non-coding downstream 946922 12367423 ~ 12368468 (-)
G145129 NA non-coding upstream 743869 14061721 ~ 14062111 (-)
G145130 NA non-coding upstream 744492 14062344 ~ 14062624 (-)
G145131 NA non-coding upstream 745013 14062865 ~ 14063123 (-)
G145138 NA non-coding upstream 839728 14157580 ~ 14161976 (-)
G145146 NA non-coding upstream 862252 14180104 ~ 14183513 (-)
AMCG00005022 NA other downstream 967062 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 1159012 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 4408796 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 4467615 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 4938389 8353989 ~ 8377001 (-)
G145046 NA other upstream 18357 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 1646562 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 2185230 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 2640852 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 4225294 17543146 ~ 17546332 (-)

Expression


Co-expression Network