AMCG00005039


Basic Information

Item Value
gene id AMCG00005039
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 13309544 ~ 13313577 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005039
atcagtCAACTGCAGGCAGATTTAACTGAAATCAAGTCCTTGCTGGAGAAGGCAGAGAGAAAGCGGGTCCAGGATGTCCTCACGGTGGAGCAGAAGAAGATCGAGAGAGAGATCACTCTGAAACAGCAGCAGAAGGAGCAGCTGTTGAACAAGGACGCTGGGGAGGCGAATAGGACATCAGCAACCAAGGGATATACAGTCAAAATCAACAACTACGGTAGCTTACCTTTCACGCATCCAGCCAATCTGTTGAGATGCCAACCAGCCGTTCCATCTGGAGCTTTCTGTCCCCTGTGCCAGCTTTGCGCGTCAGACCGGTCTTTCGTAGTCCTGGTTAAAGATCTCGACGGAAAGAACTACCAAATGACTGTAAATAACCTCCTGTGTTCGATTGATGCAAAAGAGAGCTGTCGAAAGCAGcgattgatAAAGCCCAGTATGGACGAGAGCGCGGACCCCAGCGAGGGCCTCATGAGCATGCTGAAGAAGATCTACTCCGAAGGCGATGACGAAATGAAGCGCACCATCAACAAAGCCTGGGCCGAGTCCCAAGAGAAAAAAGCCAAGGGGGGCGAGATGGATTTCTGAACCAAGACATTCAATACTCCTCccattcttgttgttgttgtcgtcatTGCTGTGATTGGAGCACTCGGCCATGTCCTCTGGCGTCACGTACAGTGCAGTGCCCTGCTCCAGCGACGGGCCGAAGAAgcaagtcattttttattttaccttctgTTGCACGCTGTTTTTTGACGAATCTGTTGAAACCAATGTATCCAGTTCAgttctgtgtttaaataaattgagaagaaaaaataaacttaattgcAGGTTATTTGTAATTGGAATGGCTGTCAGGAGCGATCTGTGACGTTTGTTTCCTTGCACTGGCGACCAGACCAGCTGGGAGAAAGTAAACGAGTTGTTCAGTTTGAGTTATAAAGAGATAATCTTATAAAACTAGTGATTGATGCATGTTGACCGAGGgattaaaaccaaaatgttcTTTAGCTCATCAATACTACATGTGCACAGAACAAAAACTTAACTACAAAATGCAGGGGAAGTATGAATGTGGTACCAGGATTATTTAAGCATGTTGGAAatcaatctataaataaaagtcAAATCAAGCTTTACTGTTTACTGATTACTTCTTTACAAGCcacagaacaaaagaaagactCATGTTGTTAAAATATGCTTGTGCTATTTTTTGCTGGAAACACCAAAACGCAAACAAAAGACTGAACCAGACGataatgtatattgttatgCTTCTTGTACAACATAATAATTACAGTTGTGTGGGACTTCCACCAGAGCATGac

Function

GO: NA

KEGG:

id description
K04507 CACYBP, SIP; calcyclin binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005039 True 1337 mRNA 0.44 4 13309544 13313577

Neighbor

gene id symbol gene type direction distance location
AMCG00005037 NA coding downstream 2584 13301123 ~ 13306960 (-)
AMCG00005041 NA coding downstream 14125 13263243 ~ 13295419 (-)
AMCG00005040 NA coding downstream 46676 13260215 ~ 13262868 (-)
AMCG00005038 eif2b3,LOC106569082,LOC107558289 coding downstream 91367 13183675 ~ 13218177 (-)
AMCG00005034 ptch2,LOC106569083,LOC106599390,LOC107557169 coding downstream 139197 13139180 ~ 13170347 (-)
AMCG00005036 mrps14,LOC107658361 coding upstream 1813 13315390 ~ 13317852 (-)
AMCG00005042 NA coding upstream 53354 13366931 ~ 13367263 (-)
AMCG00005048 NA coding upstream 78132 13391709 ~ 13429286 (-)
AMCG00005045 rfwd2 coding upstream 267884 13581461 ~ 13601804 (-)
AMCG00005044 LOC100380755 coding upstream 359166 13672743 ~ 13684709 (-)
G145031 NA non-coding downstream 50683 13257922 ~ 13258861 (-)
G144954 NA non-coding downstream 494026 12812977 ~ 12815518 (-)
G144941 NA non-coding downstream 528374 12780573 ~ 12781170 (-)
G144920 NA non-coding downstream 693594 12615715 ~ 12615950 (-)
G144893 NA non-coding downstream 941076 12367423 ~ 12368468 (-)
G145129 NA non-coding upstream 748144 14061721 ~ 14062111 (-)
G145130 NA non-coding upstream 748767 14062344 ~ 14062624 (-)
G145131 NA non-coding upstream 749288 14062865 ~ 14063123 (-)
G145138 NA non-coding upstream 844003 14157580 ~ 14161976 (-)
G145146 NA non-coding upstream 866527 14180104 ~ 14183513 (-)
AMCG00005022 NA other downstream 961216 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 1153166 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 4402950 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 4461769 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 4932543 8353989 ~ 8377001 (-)
G145046 NA other upstream 22632 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 1650837 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 2189505 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 2645127 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 4229569 17543146 ~ 17546332 (-)

Expression


Co-expression Network