AMCG00005040


Basic Information

Item Value
gene id AMCG00005040
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 13260215 ~ 13262868 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005040
ATGGTGAATGAACCAAAGGTAGTCCTGGAGCAGCCGCTGCCGGAAGTAGTCAAAGATGCTGTGAAGGAGCTGCGGCTGGCTCTGCTCTCCCCAGATGAGCTCACCAGGCTGGAGAAAGACAACCACAAAGACAGTCTTGTTCCTGTGGAGCAGATCGCAGCGGCCTGGAAGTTTCATGCTCTGAAGAAAGCCAACACGGGGGCCCGGCCCCATCTGCTGCAGAGACGCAAGGGCACACGACCCCGAGACCACCACCGCTACTTAAACCTGCAACACAAGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005040 True 282 mRNA 0.57 2 13260215 13262868

Neighbor

gene id symbol gene type direction distance location
AMCG00005038 eif2b3,LOC106569082,LOC107558289 coding downstream 42038 13183675 ~ 13218177 (-)
AMCG00005034 ptch2,LOC106569083,LOC106599390,LOC107557169 coding downstream 89868 13139180 ~ 13170347 (-)
AMCG00005025 atp6v0b coding downstream 311260 12939515 ~ 12948955 (-)
AMCG00005027 b4galt2,LOC106599387,LOC107700994,LOC107557142,LOC107713046 coding downstream 352500 12904465 ~ 12907715 (-)
AMCG00005026 b4galt2 coding downstream 418040 12818610 ~ 12842175 (-)
AMCG00005041 NA coding upstream 375 13263243 ~ 13295419 (-)
AMCG00005037 NA coding upstream 38255 13301123 ~ 13306960 (-)
AMCG00005039 NA coding upstream 46676 13309544 ~ 13313577 (-)
AMCG00005036 mrps14,LOC107658361 coding upstream 52522 13315390 ~ 13317852 (-)
AMCG00005042 NA coding upstream 104063 13366931 ~ 13367263 (-)
G145031 NA non-coding downstream 1354 13257922 ~ 13258861 (-)
G144954 NA non-coding downstream 444697 12812977 ~ 12815518 (-)
G144941 NA non-coding downstream 479045 12780573 ~ 12781170 (-)
G144920 NA non-coding downstream 644265 12615715 ~ 12615950 (-)
G144893 NA non-coding downstream 891747 12367423 ~ 12368468 (-)
G145129 NA non-coding upstream 798853 14061721 ~ 14062111 (-)
G145130 NA non-coding upstream 799476 14062344 ~ 14062624 (-)
G145131 NA non-coding upstream 799997 14062865 ~ 14063123 (-)
G145138 NA non-coding upstream 894712 14157580 ~ 14161976 (-)
G145146 NA non-coding upstream 917236 14180104 ~ 14183513 (-)
AMCG00005022 NA other downstream 911887 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 1103837 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 4353621 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 4412440 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 4883214 8353989 ~ 8377001 (-)
G145046 NA other upstream 73341 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 1701546 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 2240214 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 2695836 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 4280278 17543146 ~ 17546332 (-)

Expression


Co-expression Network