AMCG00005048


Basic Information

Item Value
gene id AMCG00005048
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 13391709 ~ 13429286 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005048
ATGGCCATGAGGTGCTGGATTTTAAGCACCACTGCCGTTCTTCTGGGCATTCTTGCCATCCCCATCCATGGAGGGCTGCTTTTGAAAGCCACCAGAGTCAGGAGGGACACGACCGAGGCGGAAGGCCGTCTTGCCAATCAAAGCATCTCCATGAAGGAGCAGCCGGTTATTTTTAACCACGTGTACAACATCAACGTGCCTCTGGAGTCCCTGTGCTCGGTGGACCTGGAGTCAGCGCCCAGCCGTGGAGTGAAGGtggaggagcaggagggggCCTCGCAATACACCGAGCAGACAGGAGATCGAGAGAACCAGGTCACCTTCACCCACCGCATCAACATCCCCAAGCAGGCCTGTGCCTGTCCCGGTGCCTCCGCCGTGCAACAGCTGGCTGACCGCATCGAGATGCTTGAGAGGGAGGTGTCTCTCCTGAGAGCACAGTGCTCCTCAAGTTGTTGTGGAGAGAGTGCAGCTGTAGGTCGGCTAGACTATGTGCCACACTGCAGTGGGCATGGAAACTTCAGCATGGATGCCTGCAGCTGTCTCTGTGAGGAGGGCTGGACGGGCAAGAACTGCTCTGAGCTGCGCTGCCCCGGAGACTGCTCTGGCCAGGGTGTGTGCATAGAGGGCGAGTGCGTGTGCGACGGGGACTTCGCCGGCGATGACTGCGCAGAGGCCCGCTGTCCGGGAGATTGCAACGGCCGGGGGCTGTGCATTGACGGGGAGTGCGTGTGCGAGGAGGCCTTCTCTGGGGAGGACTGCTCTGCCACCCGCTGCCTCAATGACTGCTCTGACCAAGGCGTCTGCATCAACGGGTCTTGCCAGTGCCAGCCGGGCTATGTCGGGGAAGACTGCTCTCAGGTCACCTGCCTCAACAACTGCAGCCAGAAGGGAAACTGCAAACAGGGGATGTGTGCGTGTGAAACTGGGTACATGGGTGAGGATTGTTCTGCAGTTGCCCCACCTACAAACCTCAGAGTAGTGGGAATCACAGAACAAACCATTGATCTGGAATGGGTTGGCTCCTTTATAGTGACTGACTATTTTGTCACCTATGCACCGACCAGCCCCGGGGGGGTCCAGTTGGAGATTAGGGTGCTAGGAAACATCACCAACTGCACCATCAGGGAGCTGGAGCCTGGCATTGAATACAACATCAATGTGTATGCTGTGCTCAACAAAGTTCTCAGTGTCCCAGTCAGTGCCGTGGTCTTGACATATCTCTCCACTCCAGAAGGTTTACTTTTCAAATCCATCACTGAGACATCAGTGGAAGTGCAGTGGGAGCCGTTTTCATACTCTTTTGATGGCTGGGAAATTAGCTTCATTCCAAAGGATAATGAAGGTGGAATGACTGCCCAGCTGCCGAGCACCATAACCTCATTCAACCAGACTGGTCTAAAGCCAGGGGAAGAGTACACTGTGAATTTGGTGGCTCTGAAGGACCAAGCTAGGAGCCAGCCTGCATCAGCAACTGTGACAACTTTGATTGATGGTCCGAGTCAGCTGATGGTCCGAGATGTCTCAGACACGGTGGCCTTTGTTGAGTGGACTCCTCCGAAGGCAAAGGTTGATCAGATTGTGTTGCGGTGCAGGCTGATTAATGGCGAGGGCCCCAGGACCACCTTCAGGCTGCAGCCCACCTTGAGTCAGTACTCTCTGCAGGTCCTGCGGCCAGGCTCTCGCTACGAGGTGTCAGTGAGTGGCGTCCGGAAGGGGAACGAGAGCGATGCCATTTCAGCTGAATTTAATACTGAAATTGACGCCCCAAAGAATTTGCGTGTTGTCTCCAAGACTTCCAGGGTTCTGGACCTGGAGTGGGACAACAGCGAGGCGGAGGTGGAGAGCTACAAGGTGGTGTACAGCACACTGGCAGGAGACCAGTACCATGAGGTCATTGTGCCAAGGAATGATGGATTGACAACCAAGGCAACCCTAACAGATTTGGTGCCAGGAACCGAGTATGGCATTGGAATATCAGCCACTCTGGGGGGCAATCAAAGTGATCCAGCAACAATGAATGCCAGAACAGGACTCGACAGTCCTATGGACTTGGCAGTGACAGCCTCCACAGACAACACCATCTCGCTGCTCTGGGGGAAAGTCCACGGGCCCATCGAAAACTACAGAGTGATGTATACCTCGTCTACAGGCGTGACATCGGAGGTGACTGTCCCCAAAGACAAGTCAGTGGTCACCCTGACTGACCTAGAGCCCGGGACAGAATACTCCATAACACTGACAGCACAGCGGGGCCGCCAGCAGAGCGCAGCCGCAACTATCGATGCTTTCACAGGCTTCCGACCGGTTACACAGCTCTACTTCTCCGACATCACTTCCTCTACAGTGACAGTGGCCTGGAGTGCCCCCGCCCCACCTGCCGACATGTTTATCTTAAACTACAACCCGCAGGACCACGGCGAGACCCTAGAGGTCACACTGGAAGGCTCTAAGACCCAAGCAACCCTCACCGGCCTACAGCCTTCCACAGAGTATATTGTCACATTGGTGACCGTACAGGGGACTATACCCTTTGAACCAGTAGTGGGGTCGGTTATCACAGGTATGGATCCTCCCAGAGAGATTGCTGTGTCTTACGTCACTGAGGACTCGGTCACAATTTCTTGGATCCCCCCGATTGCAATATTTGACTACTACAAGATGTCCTACCAGTCATCTCGAGGGAGAGTGGACAGTCAGGTGATTGACAATGATGTGACCAATTACACCCTGCACAACCTGCACCCAGCCACAGAGTATGAGATCAGCCTGAATGCGATGCGAGGGAGCCAGGAGAGTGAGGTCATGAGCGTCAGCGTGCACACAGCCATGGATAGTCCTCTGGACCTGGCGGCCTTGAATGTGACTCCTACAGGAGCTCTGCTCAGGTGGAACCCTCCTCTCTCCAGTGTGGACAACTATGTACTCATCCTCACACACAACCAAGtAGCTGCTGACACTATCCTGATAGAAGGTGCCAAGCAAGAGTACAAGCTCACCAGACTCATCCCCAGCACAAGTTATTCTGCAGCCTTATATGCCACCAAGGGATCCCTGACTAGTGGAACAAATGTGATGCCTGACACTTTgcgcccccccacctccacagcCATGGACGCACCTCAGAACCTGACAGCCAGCGAGGTCACCCACCGGAGCGCGCTCATTTCCTGGCAGCCACCTATTGCTGACATTGAAAATTACCTGCTCACCTACAAATCCAGGGATGGCAACCGAAAGGCAAGTCTTCCAAATGCTGAGGACACATGGATCCGGTTAGAGGGCCTCTCTGAAACAACAGAGTACACCGTGAGGCTGCAGGCAGCGCGAGGCTCAGAAACCAGCGTCATTGTTTCAACAACCTTTTCCACAGGAAACCGTCTGTTTGCCACCCCTCAGAATTGCGCCCAGCACCTAATGAATGGAGAGACCCTGAGTGGGGTTTACACTATTTATGTGAACAGAGACCCCAACCAAGGAGTGCAGGTGTACTGTGACATGACCACAGACAGTGGGGGCTGGATTgttttccAAAGGCGTCAGAATGGCCTAACAGATTTCTCCAAGAGATGGAACGACTACAGGACTGGATTTGGCAATCTGGAGGATGAGTTCTGGCTTGGGCTGGATAACATTCACAAGATTGCCTCCCAGGGCCGTTACGAGCTGCGGATCGACATGAGGGATGGGCAAGAATCTGTATATGCCAACTATGATAAATTTGCCATCGGAGATGTACGAAACCTGTACAAGCTCCGAATAGGGGAGTACAATGGCACTGCTGGGGACTCTCTGTCCTACCATCAGGGACGTCCCTTCTCCACCAAGGACAAAGATAATGATATTGCAGTGACAAACTGTGCCCTTTCATACAAGGGGGCTTGGTGGTACAAGAACTGTCACAGAGCAAACCTGAACGGCAAATACGGCGAGTCCAGACACAGTCAGGGGATTAACTGGTACCATTGGAAAGGCCACGAATTCTCCATTCCCTTCGTAGAGATGAAGATGCGCCCATACAACTACCGCAGCGTCACGGGGAAAAAGAGG

Function

GO: NA

KEGG:

id description
K06252 TN; tenascin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005048 True 4050 mRNA 0.54 21 13391709 13429286

Neighbor

gene id symbol gene type direction distance location
AMCG00005042 NA coding downstream 24446 13366931 ~ 13367263 (-)
AMCG00005036 mrps14,LOC107658361 coding downstream 73857 13315390 ~ 13317852 (-)
AMCG00005039 NA coding downstream 78132 13309544 ~ 13313577 (-)
AMCG00005037 NA coding downstream 84749 13301123 ~ 13306960 (-)
AMCG00005041 NA coding downstream 96290 13263243 ~ 13295419 (-)
AMCG00005045 rfwd2 coding upstream 152175 13581461 ~ 13601804 (-)
AMCG00005044 LOC100380755 coding upstream 243457 13672743 ~ 13684709 (-)
AMCG00005049 astn1 coding upstream 275940 13705226 ~ 13710482 (-)
AMCG00005047 astn1 coding upstream 310168 13739454 ~ 13744629 (-)
AMCG00005046 astn1 coding upstream 374721 13804007 ~ 13830346 (-)
G145031 NA non-coding downstream 132848 13257922 ~ 13258861 (-)
G144954 NA non-coding downstream 576191 12812977 ~ 12815518 (-)
G144941 NA non-coding downstream 610539 12780573 ~ 12781170 (-)
G144920 NA non-coding downstream 775759 12615715 ~ 12615950 (-)
G144893 NA non-coding downstream 1023241 12367423 ~ 12368468 (-)
G145129 NA non-coding upstream 632435 14061721 ~ 14062111 (-)
G145130 NA non-coding upstream 633058 14062344 ~ 14062624 (-)
G145131 NA non-coding upstream 633579 14062865 ~ 14063123 (-)
G145138 NA non-coding upstream 728294 14157580 ~ 14161976 (-)
G145146 NA non-coding upstream 750818 14180104 ~ 14183513 (-)
G145046 NA other downstream 54963 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 1043381 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 1235331 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 4485115 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 4543934 8836360 ~ 8847775 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 1535128 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 2073796 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 2529418 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 4113860 17543146 ~ 17546332 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 5312598 18741884 ~ 18764298 (-)

Expression


Co-expression Network