AMCG00005055 (LOC104960769)


Basic Information

Item Value
gene id AMCG00005055
gene name LOC104960769
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 14050704 ~ 14061662 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005055
ACGGGTGTCTGACACAATCGATACACTCTGTTTTGACACATAAGGTCTGGGTGAGAAGGGGTGGAAGGTCACTCGTCAGGCAGAACCAGGAAGGGCATGTTTAGCTGTTACAGATAGATCACATGTGTCATATTTTGTCTTGTACTcccagttatttttttaaatctgctgcTTCATAATCACATACGGTATTTCACTTGCCGGCTGCTGctacttttgtgtgttttgaagcTTCAAAGACATGACTGTCACAATGATTTTATAACATAGTACCCTTGTATACTATGTATTCATGCATtatattcagtttaaaataGTCCCCCAAAGTGCAGCAGAACATGTTGTGTAAGGCGATGTCTTCCCAGGCCGCGGTGTTTGCTCGCAGGCTGGCTGTGAAGGGAGTCGGGCAGCAGCTCCCGTGGAGGTCAGCCCTTGAGGGGCGCAGTGCTGCAGGAGTCCCAGCCCCGGCGCCCGGCACCAGACTCAGCTCACCCCGGTGGATGTCAACCTCTTACAGACACTGTTCTCAGAAGAGCACTGCAGAGCTGCGTTCTTCACACATTGGAGAGGAGATCAGCCTGTGTGGATGGATTCAGTATCAGAGGCAAGGTCTGTTTGTGATCCTGAGAGATTTCCATGGCTTGACACAGCTTCTTATCCCTCAGGATGAgCCAGAGTCACACCTGAAGAAGACGCTGTGTAAGCTGCCCTTGGAGTCTGTCGTGAAAGTGACAGGAAAGGTCAGACAGCGGCCGGCAGGTCAAGAGAACAAGGAAATGCCAACAGGGGAAGTTGAAGTGTGTGTACAGAGCGTGGAGGTGCTGAACACCTGTCGGAAACTGCCTTTTGAAATCAAGGATTTTGTCAAAAAGTCTGAATCACTCCGTATGCAGTATCGGTACCTTGATCTACGCAGTGTTCAAATGCAGTACAACCTGAGGCTGAGGTCTCAAATGGTGATGCGAATGAGGGAGTATCTCTGTAATTCTCATGGATTCGTGGATGTTGAAACTCctactttatttaaaagaacTCCGGGTGGTGCAAAGGAGTTTGTCGTTCCCTCCAGGGAGCCAGGCAGATTTTATTCCCTTCCCCAAAGCCCTCAGCAGTTTAAGCAGCTGCTCATGGTGGCAGGCATTGACAGGTACTTTCAAGTGGCTCGCTGTTACAGAGACGAGGGATCAAAGCCGGACAGACAGCCTGAATTCACCCAGGTGGATATTGAGATGTCATTTGTGGACCAGGCTGGTATCCGCTCTCTGATTGAAGGGCTGATGCAGCACTCCTGGCCCGAGGACAAGACACTGATTAGTGCCCCCTTTCCCTCCATTACTTACGCCGAGGCCATGAGGAACTATGGGGTAGATAAACCTGACACTCGCTTTGGGATGAAGCTTGTTGACATCAGTGAAGCATTCAGGAATACAGATATCGGATTCCTACGAGGTGCCCTCGGTAAACCGGAGGGATGTGTTCAAGCAATCTGTGTGCCTAATGGAGCGACACATTTGAAGAACAAGGATTTGGAATTCCTGAAACAAATGGCCCAAACGCAGTTCAACCAGGATGTGAGCGTGCTGGTGCTGAAGCCAGATGGTGTGTGGAAGTCCCCCCTGAGTAAACGCCTGTCTGAGGCAGTGAGGCAGCAGCTGCGCCAGATGACAGACGCAAGTCCTGGAGATGTGATCGTGATCGCTGCTGGACCACCACAGGAGGTGTGTCCGGTCCTGGGAAAGCTCAGGCTTCAGTGCGCGGAGCTGCTGGAGGCGCAGGGTGTGGTGCTTCGTGATCCCACTGCTTTCCATTTCCTCTGGGTGCTGGACTTCCCCCTATTTCTACCCAGAGAGGATGACCCAAGCCAGCTGGAGTCCGCCCACCACCCCTTCACAGCCCCCCACCCAGACGACGCGCACCTTCTCACCTCCCAGCCGCACAAGGTACGCGGCCAGCACTACGACCTGGTTCTGAATGGCTGTGAAATCGGAGGCGGTTCTATCCGAATTCATAATGCTGAAGTTCAGCGGTTTGTCCTGGAGAAGATTTTGAAGGAGGATGCGGGTCTGCTGTCACATCTGATTGAAGCTCTGGACTCCGGGGCACCACCTCATGGGGGAATTGCATTGGGTCTGGACAGATTAGTCTCGATCATCATCGGAGCTCCTAGTATACGGGATGTTATTGCCTTCCCGAAATCTTTCCGGGGTCACGACCTCATGAGCGGCGCTCCAGACTTCGTGCCAGCTGAAGATCTGAAGCCGTATCACATTGGCGTGACCTGGCCGGCGGAGGACTCGTCCAAAGGCTCCCCATCGGGCCCTTGGCAGCACTGAACGTCCGTGGCACTTTCTCTCCTGTGACTTTTCTCCATCAGAAGAATGAAAATAGTTGTCCTAAAAGGagttatgtattttctttccttccttcccaaCCAATAGTGAAATCCAGTAAAGATACCAGGCGTTAATGATGTAGGAAAGTGGACACCATTCTCTTTCGGGCTTTTTGAAAGAAATCCACTCCATTTTGCCTCTAGACCCCTCTTTGGATAATTCAGTTATTACCGAGCTTCAAAGGGTGCCATACTGAGGCGAGAATCTCGGTACATCAGAGTGGTTTACACTGTCAAAGGTtgagtatgttttattttattatattgttttgtaggGGTGA

Function

NR:

description
PREDICTED: aspartate--tRNA ligase, mitochondrial-like

GO: NA

KEGG:

id description
K01876 DARS2, aspS; aspartyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005055 True 2673 mRNA 0.51 17 14050704 14061662

Neighbor

gene id symbol gene type direction distance location
AMCG00005046 astn1 coding downstream 220358 13804007 ~ 13830346 (-)
AMCG00005047 astn1 coding downstream 306075 13739454 ~ 13744629 (-)
AMCG00005049 astn1 coding downstream 340222 13705226 ~ 13710482 (-)
AMCG00005044 LOC100380755 coding downstream 365995 13672743 ~ 13684709 (-)
AMCG00005045 rfwd2 coding downstream 448900 13581461 ~ 13601804 (-)
AMCG00005056 klhl20 coding upstream 5036 14066698 ~ 14075633 (-)
AMCG00005054 NA coding upstream 20796 14082458 ~ 14089340 (-)
AMCG00005064 NA coding upstream 329574 14391236 ~ 14395883 (-)
AMCG00005070 nmnat2,LOC106569066,LOC107563562,LOC107678925,LOC107658365 coding upstream 418745 14480407 ~ 14483193 (-)
AMCG00005069 NA coding upstream 483160 14544822 ~ 14552948 (-)
G145031 NA non-coding downstream 791843 13257922 ~ 13258861 (-)
G144954 NA non-coding downstream 1235186 12812977 ~ 12815518 (-)
G144941 NA non-coding downstream 1269534 12780573 ~ 12781170 (-)
G144920 NA non-coding downstream 1434754 12615715 ~ 12615950 (-)
G144893 NA non-coding downstream 1682236 12367423 ~ 12368468 (-)
G145129 NA non-coding upstream 59 14061721 ~ 14062111 (-)
G145130 NA non-coding upstream 682 14062344 ~ 14062624 (-)
G145131 NA non-coding upstream 1203 14062865 ~ 14063123 (-)
G145138 NA non-coding upstream 95918 14157580 ~ 14161976 (-)
G145146 NA non-coding upstream 118442 14180104 ~ 14183513 (-)
G145046 NA other downstream 713958 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 1702376 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 1894326 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 5144110 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 5202929 8836360 ~ 8847775 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 902752 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 1441420 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 1897042 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 3481484 17543146 ~ 17546332 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 4680222 18741884 ~ 18764298 (-)

Expression


Co-expression Network