AMCG00005056 (klhl20)


Basic Information

Item Value
gene id AMCG00005056
gene name klhl20
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 14066698 ~ 14075633 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005056
ATGGATATCACCAGCCGCTGCACTCTTGGTGACCCCAACAAGCTCCCGGAGGGCGTGCCCCAGCCGGCGCGCATGCCCTATGTGTCCGACAAGCACCCCCGGCAGACCCTGGAGGTCATCAACCTCCTGCGCAAGCACCGCGAGCTGTGCGACGTGGTCCTGGTGGTGGGCGCCAAGAAGATCTACGCCCACCGGGTCATCCTGTCCGCCTGCAGCCCCTACTTCCGGGCCATGTTCACGGGCGAGCTGGCGGAGAGCCGTCAGACGGAGGTGGTGATCCGGGACATTGATGAGCGAGCCATGGAGCTGCTCATCGACTTCGCCTACACGTCGCAAGTCACCGTGGAGGAGGGCAACGTGCAGACCCTGCTTCCGGCCGCCTGCCTGCTGCAGCTGGCGGAGATCCAAGAGGCCTGCTGCGAGTTCCTGAAGCGCCAGCTCGACCCCTCCAACTGCCTGGGCATCCGCGCCTTCGCCGACACCCACTCTTGCCGAGAGCTGCTGCGCATCGCTGACAAGTTCACTCAGCACAACTTCCAGGAGgTAATGGAGAGTGAAGAATTCATGCTGCTTCCAGCGAATCAGTTGATCGATATCATATCCAGTGACGAGCTGAACGTGCGAAGTGAGGAGCAGGTGTTCAATGCAGTCATGGCCTGGGTGAAGTACAGTATTCAAGACAGGCGTCCTCAGCTGCCACAGgtaTTGCAGCATGTTCGATTACCTCTCCTGAGCCCAAAGTTTCTAGTGGGGACTGTGGGATCAGACCCTCTTATAAAGAGTGATGAAGAATGCAGAGACTTGGTTGATGAAGCCAAAAACTACCTTCTCTTACCTCAAGAGCGCCCCCTCATGCAGGGACCACGGACCAGGCCACGGAAACCCATCCGTTGTGGGGAGGTTCTGTtcgcagTCGGAGGCTGGTGCAGCGGCGATGCCATTTCCAGCGTGGAGCGCTACGACCCCCAGACCAACGAGTGGCGCATGGTGGCATCCATGAGTAAGAGGCGCTGTGGGGTCGGCGTCAGCGTCCTCGATGACCTCCTGTACGCAGTGGGGGGGCACGACGGCTCCTCTTATCTAAATAGTGTAGAAAGGTATGACCCCAAGACCAACCAGTGGAGCAGTGATGTGGCTCCTACCAGCACGTGCAGGACCAGTGTTGGGGTGGCTGTTCTGGGGGGGTATCTTTATGCAGTTGGAGGACAGGACGGAGTCTCATGTCTCAACATAGTTGAAAGATATGACCCTAAGGAGAACAAGTGGACACGCGTGGCCTCCATGAGCACTAGACGTCTGGGGGTGGCAGTTGCAGTATTGGGAGGGTTCCTCTATGCTGTCGGGGGATCGGATGGCACGTCTCCTCTCAACACTGTCGAGCGCTATAACCCTCAGGAGAACCGCTGGCACACCGTGGCACCAATGGGCACGCGGCGGAAACACCTAGGCTGCGCAGTGTACCAGGACATGATCTACTCTGTGGGCGGCCGGGACGACACCACCGAGCTGAGCAGTGCAGAGCGGTACAACCCCAGGACGAACCAGTGGTCTCCCGTAGTGGCCATGACTTCTAGGAGGAGCGGCGTTGGTTTAGCTGTAGTGAATGGACAGTTAATGGCAGTTGGCGGCTTTGATGGCACAACGTACCTGAAAACAATAGAAGTCTATGATCCTGATGCTAATACATGGAGGCTCTATGGGGGAATGAACTATCGCCGGCTCGGTGGAGGAGTAGGCGTCATTAAGATGACACACTGTGAATCTCATATATGGTAA

Function

symbol description
klhl20 Predicted to be involved in protein ubiquitination. Orthologous to human KLHL20 (kelch like family member 20).

NR:

description
PREDICTED: kelch-like protein 20

GO: NA

KEGG:

id description
K10457 KLHL20, KLEIP; kelch-like protein 20

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005056 True 1776 mRNA 0.58 10 14066698 14075633

Neighbor

gene id symbol gene type direction distance location
AMCG00005055 LOC104960769 coding downstream 5036 14050704 ~ 14061662 (-)
AMCG00005046 astn1 coding downstream 236352 13804007 ~ 13830346 (-)
AMCG00005047 astn1 coding downstream 322069 13739454 ~ 13744629 (-)
AMCG00005049 astn1 coding downstream 356216 13705226 ~ 13710482 (-)
AMCG00005044 LOC100380755 coding downstream 381989 13672743 ~ 13684709 (-)
AMCG00005054 NA coding upstream 6825 14082458 ~ 14089340 (-)
AMCG00005064 NA coding upstream 315603 14391236 ~ 14395883 (-)
AMCG00005070 nmnat2,LOC106569066,LOC107563562,LOC107678925,LOC107658365 coding upstream 404774 14480407 ~ 14483193 (-)
AMCG00005069 NA coding upstream 469189 14544822 ~ 14552948 (-)
AMCG00005071 NA coding upstream 507510 14583143 ~ 14618511 (-)
G145131 NA non-coding downstream 3575 14062865 ~ 14063123 (-)
G145130 NA non-coding downstream 4074 14062344 ~ 14062624 (-)
G145129 NA non-coding downstream 4587 14061721 ~ 14062111 (-)
G145031 NA non-coding downstream 807837 13257922 ~ 13258861 (-)
G144954 NA non-coding downstream 1251180 12812977 ~ 12815518 (-)
G145138 NA non-coding upstream 81947 14157580 ~ 14161976 (-)
G145146 NA non-coding upstream 104471 14180104 ~ 14183513 (-)
G145148 NA non-coding upstream 128626 14204259 ~ 14204489 (-)
G145173 NA non-coding upstream 351333 14426966 ~ 14455083 (-)
G145358 NA non-coding upstream 992780 15068413 ~ 15069113 (-)
G145046 NA other downstream 729952 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 1718370 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 1910320 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 5160104 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 5218923 8836360 ~ 8847775 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 888781 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 1427449 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 1883071 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 3467513 17543146 ~ 17546332 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 4666251 18741884 ~ 18764298 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_13197104_13205895 KLHL20 coding CI01000004 null 13197104 ~ 13206585 (+)