AMCG00005069


Basic Information

Item Value
gene id AMCG00005069
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 14544822 ~ 14552948 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005069
AAGAAACATTTCCTGAAACGGCCGCCTCACAGGCACTACAAGAGGATGTTGCAGAGCGGCACAGACAATGCCCACGAGTTGATCCCAGCTGTAGGGACGCCAACTCCACTCTGCTCAGTACCGGAGGATTATCACAGCCTGGCCGTAGACCATGTCTCTTGTGGACACCATCAGGCAGTGGGATGAGGGAGTAGCTGCTGCTGCTAAGAAGGATTGGGCAGCTGCTCTGAGGGTGTTCTCTGAGATAGGGGAGAAAAACTCAAAAATCTTCTTCAATATTGGCTGCCTCCACTTGAGCTATGAAGACCTGAATGCAGCTGAAAAGGCTTTTGATAACAGTATCTGTAAAGATGAACACCTGGCCGTGGCCTTTTTTCAGAGGGGGATCAccttttacaaaaaacaaaaGTTTGAAGAATCTTTAAGTGACTTTAAAAAAGCCTTCTCAGAACTACGTGGAAATCAGTTAATCGACTACAAACTGCTTGGCCTGAGGTACAAACTGTATGGCTGTGAGGTCCTGCACAACGTGGCGCTGGTACATGCTCAGCTGGGAGAATGGGAGAAGGCCGAAGAGAACCTGCACATGGCGCTGAACCTCAAGACGGAGGCCAAGCACAGTCACATCGACCGAGCACTGGACTCCATTCTGAAGCAAAAGCTTTTCAGTCTGGTGGAGGTGACTGTGGGGGAACTATTCAGACCCAACAAGCAGCACGTCGCCGAGCTGGATAAGAAGGACTACCTGGGCAAAGCCAAGGTCGTGGCATCCATCATCCCCAAGGATGAGTTCTCTGGGTTCGCTCCTCTACAGCCCCAGGTGGAAGAAGCTCCTTCCAGGCCCAAAGCCCCTGAAGTACTGAGAGCCCTGGAGGGGGAGCCCCACCGTGTGCTGTATGAGTTCCTAGCCGAGACCCCTGATGAGCTGCCTGTTGTGCCAGGAAACATCGTTTTTGTGCTGATGAAAGGCGTGGACAACTGGGCTACAGTGGTCTTCAATGGGAAACGGGGACTTGTTCCTTATAACTTCCTGGATCCCGTGGTGTTAACACTTACATCAAAGCAAGGACAGGAGGGGAATCAAGCTGAAGACATCCCAGCGCCCCCCAGAGGAGAGCCCCCAGTCAGACCAGTGCGGATGACAGTGCTGGAACCCTCTATTCCAGGattaccaaaaaagaaaacagacaagcAGttggaaagagagagaggacgcAAAATCTGCATTGTGAAAGTGCACTTCACATACACCATGGCCCTCTCCCTGGAGCCAGGACTGCCATACAGCGTTAAAAACGGAACAGACAAAGTGACTCTGGATGCGTCTGAAATGGAGAACGCTTGGAGAGATGTGCAGAACGGTCGTCTTACCCTTTGGTGCGAGTTGATAGAGAACAAGGAGAACATGCCAGAAGAAGATAATCCCCAAGTAGTGGCCCTGTATTCCTACGAAGCCTCACAACCCGAAGATTTAGAGTTTAAGGCAGGAGATGTCATCAAAATCCTTACAAAAGtGACTGAAGACTGGTACGAGGGAGAATGCAAAGGAAACGTGGGCCTTTTCCCTGCTGCGTTTGTGAAGCAATACGCCATTGAAGATCGAGTCATCTGACATCTACGGGCCAAGCTGaccttttcctcttttcttcacgaaaaaaacaatttattgCACTCCACTTTATTGTAATGGAATTGTCCATATACCTAGTATGCAACGTGAGCTATGAATTAAACATTCGCTGTATGTGAAGATTGCCCTTTTCTTAAAACTGCTTTTTGATCAATACAGACATCCTTGCCTTCAAATACAAGAGCATGCAACAATTAGACATCACTCTTCAAGAAGCTGATTAGGAGCACGGTACCAAATAGTGGTGGCACTGGTATATTTGACATGGTTGTAATACATTTCTAGGACTTCCCTAAAGTCCAACTTCTGTTTCAAGCAACTTTGAGGGATTCTTCAATGGTGATTCACTAGGAGAGAAAACAAGGCAGACAACTTTTAGGGAGAACATGGTTTACTTTATTAAAGGCATAGCCGATTCCAGCAATTGCTGCAGAATGTCTtgcacagaaagacagaaaacacaaaagcttAGAACACAAACCAATTTCCGATGAGAACCCCCCCTCCCAAGCCCAGAACGGGAGCGATGGTGGNNNNNNNNNNGGGGGTCTTTCCCAAAAAA

Function

GO: NA

KEGG:

id description
K08010 NCF2, P67PHOX; neutrophil cytosolic factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005069 True 2192 mRNA 0.48 15 14544822 14552948

Neighbor

gene id symbol gene type direction distance location
AMCG00005070 nmnat2,LOC106569066,LOC107563562,LOC107678925,LOC107658365 coding downstream 61629 14480407 ~ 14483193 (-)
AMCG00005064 NA coding downstream 148939 14391236 ~ 14395883 (-)
AMCG00005054 NA coding downstream 455482 14082458 ~ 14089340 (-)
AMCG00005056 klhl20 coding downstream 469189 14066698 ~ 14075633 (-)
AMCG00005055 LOC104960769 coding downstream 483160 14050704 ~ 14061662 (-)
AMCG00005071 NA coding upstream 30195 14583143 ~ 14618511 (-)
AMCG00005073 NA coding upstream 68232 14621180 ~ 14625015 (-)
AMCG00005072 pde4dip,LOC106569692 coding upstream 72296 14625244 ~ 14633980 (-)
AMCG00005075 prrx1,LOC107726494 coding upstream 124712 14677660 ~ 14690953 (-)
AMCG00005074 gorab coding upstream 148400 14701348 ~ 14705852 (-)
G145173 NA non-coding downstream 89739 14426966 ~ 14455083 (-)
G145148 NA non-coding downstream 340333 14204259 ~ 14204489 (-)
G145146 NA non-coding downstream 361309 14180104 ~ 14183513 (-)
G145138 NA non-coding downstream 382846 14157580 ~ 14161976 (-)
G145131 NA non-coding downstream 481699 14062865 ~ 14063123 (-)
G145358 NA non-coding upstream 515465 15068413 ~ 15069113 (-)
G145387 NA non-coding upstream 552270 15105218 ~ 15105450 (-)
G145401 NA non-coding upstream 592850 15145798 ~ 15149592 (-)
G145434 NA non-coding upstream 700565 15253513 ~ 15254888 (-)
G145436 NA non-coding upstream 702941 15255889 ~ 15257664 (-)
G145046 NA other downstream 1208076 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 2196494 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 2388444 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 5638228 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 5697047 8836360 ~ 8847775 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 411466 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 950134 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 1405756 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 2990198 17543146 ~ 17546332 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 4188936 18741884 ~ 18764298 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034980 ncf2 coding NC_007118.7 CM002891.2 41329748 ~ 41338923 (-)