AMCG00005071


Basic Information

Item Value
gene id AMCG00005071
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 14583143 ~ 14618511 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005071
TTGTTTTACTTGGACAGATTCATGATCCGCCTTGTCTGGTATTAAAAGGCGAAACGCTGCTTTTTTTTGCCTCTGGTAAGCCTGTCTTTTGTGAGTCTCCTCTCAAAGGTGGTGGTGACATTTTGTCCGCTGAAGATGTCCTGTCTGGCTCCTACCGTTTGCACAATCAAAACAATGGATTCACGATAAACACCCGACTTTTTGAGGGAAAGTTTTGAATGATTGCTTTTTGATCACTGATCAGTGATTTTGATGATTgctttttaatacatatgtgTTTTATTCAACTAGTTTAAATGGCTCCAGGACTCAAGTGGACATACACCTTTGCATAGAAAACTGCAACTTCATTGGGGATCTTGCtcagaagaaaggaaaacactGAATTTCTCAGTTGGTTGGTGAGACTTCtgattattcattcatttgccAGTTTGGTAGACTTAAGGCTCTCTGGCAAATAATACATCTCTATTTGAAACTAAATGGATTATCTGTTATAGAAATGTAGCCTCAAAGAAGACATTTGATTGCTTCTATAGCGCACAGACCTACTTTTGAGTTACCGTAGATTTGGGAACCTCAATGTTGGATTCCAGGATGAAGGACGTCTGCAGGATCTGTGCCCGCGAGCTGTGCGGCAATCAGAGGCGCTGGATCTTCCACACCGCCGCCAAGCTCAACCTGCAGGTGCTGCTGTCCCACGTGCTGGGCCGGGAGCTAACGCGCGATGGGAAGGGCGAGTTCGCCTGCAGCAAGTGCACCTTCATGCTGGACCGCATGTACCGCTTTGACACCGTCATCGCACGCATCGAGGCCCTGTCCATCGAGCGGCTGCAGAAACTGCTCCTGGAGAAGGACCGGCTGCGGCAGTGCATCAGCGGCTTGTACCGCAAGCACAACGGCGACGAACCGGCCCCCGAAATCAAGGCGGCCGACTGCACGGTCGACATCTCCGGCTTACCGGACGTCAAGTACAACGCCTTGCTCCAGGAGGACTTTGCCTACTCTGTATATGAATCTTGGGCTGAGCATGAGGAGCAAACGGTTGAATCGCACTACCACCACTGCCACATGTCCGAGGTTTCGGTGCATCGCTCCAGGCGGTGCCGAGGCTGTGCGGCCCTGCGCGTCGCCGACTCGGACTACGAAGCGGTCTGCAGGGTGCCCCGGAAACTGGCTAGGAGCATTTCCTGTGGGCCTTCCACCAGGTACTCGGCCAGTTTGATGGGGAGCATGTGCAGTGTGGAGCCGACAGCCGTGACCCCCGTGCCCGAGACGCCGCCAGCGACTTCTACCGGTGATAAAACTCTAGAAGATGCCGACCTGGAGAGGATGAGCCCCGGTTCGTCCGTGGAGTCCCTGGACACCGCTGTTGAAATGGGCCCGTCCGCTGCCAAGGAGGAGGAGGCCGAGAGAGAAATGAGGGAGGACCAGAAATCAGATTCCTGGTCCGAGGAGCATTTGGCCCTGCAGGGGCCGACTCCGCATGCCAACAGGCTGGACTTGGCCCTCAGCTTGGTGAAGAACTTTGAGTACCGGCCCATACAGAGCCCACGAGGCAGCAAACTCCCGATCCTGGTGAAATCGCCAGGATCTAACAGCAAGATTGCCTTCACAGACCTGACCGTCAGGACGCCTTACAGCAGTGGCTCCGAGTTTCCCACTCATTTCCAAGAGTTGGTCCCCCCTCGAATCCAGCACGATTTGCACCTGGAGTTGTCCGAGCTAGAGGAGCTATGGCAGGATATCTATGTGGAGTATATGCCCTTTCACTGTCAGAACCTGATTGAGGAGCAGCAGAGCCAGCTGAACCAGTACGAGTGTGCGGCCGGGCAGTGCGTCAGCGAGCTGCAGAAAGCCCAGCTCCAGGTGCAGGCCCTGCAGACCAAGATCCACGAGACTGAGAACACGAATAAGAAGCTGCAGGAGAAGCTCCAGGAGATGGAGTGTGAGCTCCGAGCCATCCGGCAAGCCGCCCAGAAACAGGAGCGCACCATCCAGGGGCTGAGCGAGACGGTCAGCACCAAGGACACGGAGGCTGAAGAGCTGTACCGAGTCATCGAAGGGCAGAACGACACCCTGTGTAAACTGAGAGAGATCGCCCATCGCAACCAGCTGCAGCAGATGCAGATGTCTGATGGAGAGGGGGACCCTGCACAGCTGCCCCAGCTCCAGACTGAGCTGCTCGCCCTGCAGAACTCCCTGTTCTCCACCCAGCTGGAGCTGCAGGGCTCCCAGAGGGCCCAGCGGCACAGTGAGCGCCAGGCCGCTGCCCACGCCCGCTCTGCTGAGCGCCTGCAGAGCGACCTGCAGGAGGCGCTGCAGCACCGGGAGCTCACCGAACGGCACAACCAGGAGTTGCGCAGCGCCCTCCAGCAGGCCCGAGCAGAGCTGCAGACGAAGGAGCAGCTAGTGAAGGAGAAGGACAGCGAGAAGCGGCTGCAGGCCGTGGCTCAGGAGAGCACCATGCGGCAGCTGAGACTCTCTCTACAGGAGAAGGAGCAGCTTGTCCAGGAATACATGGATCTCCTGGATCATCAACAGGACTCCACTGAGAGTCGCGACACCCTGCTGGACAAACTGAGGGAGCGGATCAAGGACCGCGACCGAGCCCTGGAGCGTGCCATCGACGACAAATTCCGCTGcctggaggagaaggaggctgAGGTTCGGCGGCTGCAGCTGGCCCAccgggagaaagagagggatcTGGAGAGATTGCGCTGCATCCTGTCCAATAACGAGGAGACCATCACCAGTCTGGACGGGCTTCTGAAGGTGAAGGAGCTGGAGTTGGAGCAGAGCTCGGTGTCCTGCAGGAACCTGCAGTGGTTGAAGCAGGAGACCGAGGAGAGGCTAGAGCACagcctgagggagagagacgcCATAGTCGCCCAACTGCAGACGTCCCTGCAGAGCCGCACCAAGGAGGCGGAGGAGTTGACGGCGGTGCTGCTGAACAAGGTGTCTGTGGGCGGCGGTGAGCTGGCGGAGGAGCTGAAACTGCGCCTGCAGCTGAAGGAGCGCCTGTTCCAAGAGGTGCTGGCGGACCGGGCCCGGCAAGCGGCGCAGCACGAACGAGAGGTCCAGGAGCTGCTCGGCATCATCAGCACCAGGGACCAGCAGATCAGGGACACGGTGGCGCGACTCACGCAGGTGATCGGCGAGCGGACCGGAGAGCTGCAGGAGCTGCGCAGACACCTGGCCGCCAAGGAGCGCGAGATGGGTGAGCTGAGCCGGGAGAAGGAGCAGCTCAGCTGGGACCCCCGCAGCCAGATCAGTCACCTGAAGAGCCTGCTGCGGGAGAaagaggccttcatccagGAGCTCATGCAAGGCAGTCCACATGACCAAGACGAGCCAATGATCACATCGAAGCCTGGGGATTTGACTCGTGGCAGCGAAGATGAGGGCCAGAACGAAGGACTGCAGAGAGACATGCAGGAGGTACAGGAGGAGCTCCAGCTGGTCCTGAGGAAAGAGCAGGAGGCCCAGCGGGAGCTCTTGGGTCTGCAGTCTGTCCTGGCCAAGCAGAAGGAGGAAGTTCAGATCCAGGCCTCAAACATCAAGTCCCTTACCTGCAACTTGCAGATCAAGGAAGAGCTTATCCAGGACCTGCAGAGGCAGCTGGTGGATCCCTCGGGGTTACCTGTTGTGGAGCGGCTAACTcaggagctgcaggagctgaGACAGACCGTCGCTCTGCTGGAGACATCCGCTGCCAGCCCCAACCACCAGGTACTGAACGTACACCAAGAGTGTGTTCTGGAGCATCTTGTGTCCGAATACAACCGGCTCAATGAAGCTCTGAAGACAGAGAAACAGCTCTACCACAGCTTGTCCCAGCTCCACACCCATGAGGACAGCTCTGAGCAGAGTCACGCCCTGCAGGTGGAGCTGAATACCGTGCAGGCACTGCGAgggcagctggaggaggccctGGCGAGGACCCACGGCGGCGCTCTGAGGCTGGGAATGGCAGCCGAGACGCACCCTGATTTTGGAGAGCTCAGCACggaggaggaagatgaggaCGAGGAAGATGATGATAGTAGTGAATTCACAGACAGTATTGAGGAAGAAGAGAACTCAAAACTGACGGCTCTGACTCTGTCCACCAATCAGGGACACCTGGCTGAAGGTCCCATGAGCAGATTGGCATCCCGGGATGTGGCGGTGGTTGAGCAGGGCCTGGTGGAGTTGAGAGGTGAGCTGCAGCAGCTGATGGAGCAGAAGAGGACAGTCAAGAGCGAGCTGGCGGAGCTGAAGACCCAGCTGGAGAACACAGGCTACGCCTCGCTGTCACAGATGAGGAACGCGCTGCTGAGTCTGCGGCTGGAAAATGATGAGCTGAAAGGTCTGGCAGGACAGGGCACGTGGGGAAGGTGGGAGAAGGGTGAGGCGGGCAGGCTGAGCCAGGAGGCGGACACCTGGGGCGGGAGGCTGGGCGGCACAGACGCCGTAGTGGAGAAACGGAAGGAACATCTGCAACTGAACTGCCAGATCCCCGAAGAAGAGGGGCCGGAGCTGGCGGGAAGCGTTGTCGATGAAGGGGACGGTCGCCAGGAGGAGCTGGGCCCGGCGCAGGGGAAGCGCTGCGCCCCGGTTGTGCAGCACAGAGAGGGCCGAGGGAAGAGGAGGTGCACCCGGCCTCACTCTCTGGACTTGGGGGCGTTGCTGTCCCACTGCCCCGGCCACCCCTCCACACAGCCGGAGGTGAGCCCTGGTGGGTTCTGGGAGCACGTGGAGGTCAGTCTCCGGGAGCAGACGCAGCAGCTCCGCACAGACCTGGCCTTGAGTCGACAGGAGAGCCGGGATCTGCAGGAGCAACTGATGGTGTCGGAGGCCACGGTGCAGGCGCAGGCAGAGCAGCTCAAAGAGTACAGAGTCCTGCTCACCGAGTCTTCAGTTGAGCAGGACAGTAAGCAGGTACAGGTGGACCTCCAGGATCTGGGCTACGAAACCTGCGGACGCAGTGAGAATGAGGCGGAGAGAGAAGACGCCAGCAGCCCAGAGTATGAAGACCTGGACGTGCACGGGCCTGCGTACACAAAGGGGCCCGAGTGCAGCCTGGGTCCGCAGCCGCTGCTGTCCTGGGTGGGCGTGGGGGAGCTGGGTGAGTGTGAGGACGTGGCAGCTCTCCAGCAGCATATCCAGGACTTGCGCGGCCAGCTGCGCCGCTCCGACAAGATAATCCGCAACCTGCAGAGCCGTGTGCGCTCCTTCTCCACTACCAGCGACTATGCATCCAGCCTGGAGCGCCCCCGCAAGGTCAACTGGAGCTTCCAGGCCTCCCCCTCCCACAGCGGCCTGGAGGAGGACGAGGGCTGGCAGTCAGACGGGCTGGGCGTCCCGCCGCCACAACCCAACaaggagctgcaggagctggTGTTGCGCGTGGCTTCACTCGAGGCCCAGCTCAAGAGCTCCAGACTGGACAGCAAAACCTCCACTGAGGACCTCAAGTCTGCCACCTGGCCGGGGAAGTACGACTCCCTGATCCAGGCGCAGGCCCGGGAGCTGTCCCACCTGCGGCAGAAGATGCGCGAGGGCCGTGGCGTGTGCCACATCCTGTTCCAACACCTTGGCGACACCACCAAGTCCTTCGAAGAGCTGCTCCGTGCCAACGACATTGACTACTACATGGGCCAGAGCTTCCGGGAGCAGCTGGCGCAGAGCACGGCGCTGGCGGACAGGGTCAACACCAAGCTCAGTGGCCGAGACCGTTCAGAGCTTGATGACAAGACAGGACACGAGTTACTTGCTCTCAGGCTAAGTAAGGAGCTCCAACAGAAGGATAAAATCATCGACTCTCTGCGCAACAAACTGCAGCAGCGTCCCGACACGCCCTCCAGCAGCCACGCCTTCTCCGAGAGCACCGACCAATCAGACAGGACCTCCTTCGTGTCAGATGACCATGGCTCGACCAATGAAGACCTGGAGCTGTGCTCGGATGTGGACGGCGCCAGCGAGTACACGCAGGAGGAgcagggggacagagagagccCAGGGCAGGCCAGCACAGattctCACTGTCATGGTGGCCCCCCACCACAACACCCATCTATCCCATCTTCCACCACTGCATCCCATGGGACTCAGTCATCAAACAGCAGTCCCAATTTGCCATGCACACAGTGTAAACCTTTGGAGCCCAACCCAGAACAGAAAGGCCTTAACTCTAGCCCCCCGTCCAGTGCTGCCCCCTTTCCTCAGCCTCACTACTGCCCTGACCCCTCAGGTCAGCCTGGTGCCCTGCCCTTTGACCCCCACCTGCCACTCCTCGGCCCCAGTTACCATGGCGCCGCCCCCTTCTCCCTGGCAGAGGTACACCAGGAGCTGCAAATGCTGCAGAGACAGCTGGGAGAAACTGCGGCTTTTGCTGTTCCTCAAGTCAAACCGCTTCCTAACTTCCCCCTGACGGGCCACGCTCAGCCCGAGTGCTCCAGCTACCTCCCGCTATCCCATCATCCCTTTCACCAGCCCAAGCTCAGCATCCCTCCTATTGGCAATGGCATTCTGAAGGCAGAGACAAGCTTGCTGGGAAACAATGCCGTGTGGGATATGGCCCACCCTGTGAGGCCAATCAGAGCCCATAACTATGGCGATGTGTCTTCGGGATCGTCCGGCTATCAGTCCGGCACCAGCCACACAGGCGCAGATCTGATCGAGGAGCATCTGAACGAGATCCGAAGTCTGCGCCAGCGTCTGGAAGACTCCATCCGCACCAACGACCGTCTGAGACAGCAGCTGGAGGAGAGGCTGGCGACCGCAGGGAGAGACAGTGGCCCTCCCACTAACATCTACATCCAGGGCCtggagtcagtcagtcagctgtCCAATGAGAACCGAGTcctgagagaggagaacctGAGTCTTCAAGCCCGTCTCAGTCAAGCCAACAGAGAGAGCACGGCGGAAGCGGAGCAGCTGCGGGAGGCGGTGCTGGCGGGCCGGGCGCAGCTCAAACAGCTGGAGCTGGAGGCAGAGCAGTGGAGGGAGGAGAGCCGGCAGCTGCAGGGCCAGAGCTGTgagcagctgcaggagctgcAGAAACTGCGACAAGAGAGACAGGCCGGGCAGGAGCGCAACAACAGGTTGCAGCATGAGGTGAacctcctgcagcagcagctgtcCGAGAGCCACCAGCTGCTGCGCTCCCTGCAGTGTGAGCTGCAGGTGTACGACCGGGTGTGCGGCACTGGCCAGGGCCCACTGTCAGGGTATGGAGGGGAGGTGAAGTACCATGGGGCACCCACGGCCTTGGAGCTGAACGAGCTGCTGGCGGAGGTGCGCAGCCTCAGGGTGCAGTTGGAACACAATATCCAGGAGAACAGCTCCCTGCGGCAACAGCTGGAGCAACAGCTGGAGAGGAGCGGAGCCCCCAGCGAGCCGCGGCCCACCTCCATCTCCATCATGACCCCCCGCGATGGTGGCTGCAGGCGGCAGCTCTTCCAGGATCCAGTGCCCTCTCCACCAGTCAGAGACACCGGGTTGTTCAACCCTGGATCTCCCTTCGCTTTGTTCTCAAAATCCACCGACCTGGAAGAACCTGACCTCACAGGGAGTGGAGATATTTTGAAGCCAAAGTCTGTGTTGGAAGGCGAGGCACCAGATGGCTCCTTTGCCAATAAGAATGGGCGCCATGCCATCGGGCACGTAGACGATTTCAGCGCTTTGCAGCAGCAGATCTTGGAAGGGAAGGTGCTGGTTCACAAGATGGAGGCCATGCTGCAGGCCTCCCTCAACACTGCCATCCTGGAGGTCACCTCAGACAAGGCCCTGGACTACAGCTGTGTGAAGACACTCCTCTCTAACGCGAAGACCTTGCGGCAGATCCTGGAGGAAGCCACCTCCCTCCTCAAGATGTTCTGGAGGGCTGCTCTGCCCAGCGGTGAGGGCTGCACTCAACACTTCAAAAAGGAACAGTCCATGAAAGAGGAGATCCACAAGCTGCGTCAGAAGATCACCGAGCAGGAGGGTCTGCTCCAGAACACCATCGAGAGGCTGAGGAACAGCAACCGCACCAAGGAGAGCATGGAGCATTTCATCGTCGGCCAGCTGTCAAGGACACGTGATGTGCTGAAGAAAGCAAGGACGAATCTGGAGAAGAATGAGTACCAGATTTCCTCCCTAAGCTCCTCCTCCCCCTGCCCTGGTAAAGCTGAAAGCCCAAGACTCCACCGTGAACGCCCTTCTGATTGGAGTTTCATGACCCCTCGGAAGCAGGAGTCGGCCAGGAAGAAAGCGGCCCATCGCTCAGCCAAGAAGAGAAGTGGCCTGAGCTTGCTTCAAAATAAGGTGTTTGTGATCATCACTGAATGCTACGATAAAACCACACGTGATGTGCTGATAATAGAACATGTTAAAAAGAGAAGTAAAAGAATATGCTATGTGAAGAACTGCAAG

Function

GO: NA

KEGG:

id description
K16549 PDE4DIP; myomegalin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005071 True 8412 mRNA 0.59 43 14583143 14618511

Neighbor

gene id symbol gene type direction distance location
AMCG00005069 NA coding downstream 30195 14544822 ~ 14552948 (-)
AMCG00005070 nmnat2,LOC106569066,LOC107563562,LOC107678925,LOC107658365 coding downstream 99950 14480407 ~ 14483193 (-)
AMCG00005064 NA coding downstream 187260 14391236 ~ 14395883 (-)
AMCG00005054 NA coding downstream 493803 14082458 ~ 14089340 (-)
AMCG00005056 klhl20 coding downstream 507510 14066698 ~ 14075633 (-)
AMCG00005073 NA coding upstream 2669 14621180 ~ 14625015 (-)
AMCG00005072 pde4dip,LOC106569692 coding upstream 6733 14625244 ~ 14633980 (-)
AMCG00005075 prrx1,LOC107726494 coding upstream 59149 14677660 ~ 14690953 (-)
AMCG00005074 gorab coding upstream 82837 14701348 ~ 14705852 (-)
AMCG00005076 NA coding upstream 117328 14735839 ~ 14741930 (-)
G145173 NA non-coding downstream 128060 14426966 ~ 14455083 (-)
G145148 NA non-coding downstream 378654 14204259 ~ 14204489 (-)
G145146 NA non-coding downstream 399630 14180104 ~ 14183513 (-)
G145138 NA non-coding downstream 421167 14157580 ~ 14161976 (-)
G145131 NA non-coding downstream 520020 14062865 ~ 14063123 (-)
G145358 NA non-coding upstream 449902 15068413 ~ 15069113 (-)
G145387 NA non-coding upstream 486707 15105218 ~ 15105450 (-)
G145401 NA non-coding upstream 527287 15145798 ~ 15149592 (-)
G145434 NA non-coding upstream 635002 15253513 ~ 15254888 (-)
G145436 NA non-coding upstream 637378 15255889 ~ 15257664 (-)
G145046 NA other downstream 1246397 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 2234815 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 2426765 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 5676549 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 5735368 8836360 ~ 8847775 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 345903 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 884571 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 1340193 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 2924635 17543146 ~ 17546332 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 4123373 18741884 ~ 18764298 (-)

Expression


Co-expression Network