AMCG00005074 (gorab)


Basic Information

Item Value
gene id AMCG00005074
gene name gorab
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 14701348 ~ 14705852 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005074
CAAAGGGGTCCTAGATTGGGACCTGTACGTGGCAGCTGCTCAAAAATGGTTCCCTAGTAATGCGGAATTGGAGTGAAGCTGTTTAgggaaatgtttctgttttgtttcaacggtttgtgtgtttttatttttacttgacACTCCGAGTTGCTTTGCTGGGGAGCCGTGCAGAGATGGCTGCGTGGGCGGGCTTCTCGGAGGAAGAGCTCCGCCGATTGCAGTATAAAGCAGATCAGGTGGCACTGAATGCCTCCAGCCGGGGCCGCAGACCACCTCCGACCAACAGGAGCCGCCAGCAGCTGCAGCGAGAGAAGGCCCTGCAGGTGGCAACCCAGCAGAACGGCCCGGCTCCTCTACCAGCCGAGCAGCAGCTTGCCAAGCCCAAAGTGCCGGCCCTCGCCCAGAGTCCTCCAAAGACACACCAGGAGAATGAGGCTCTCCAGAGGAGCAGGAGCGTGGAGAGCGAGCAGGGAGCCCAGGGCCAACGCATGGCCCTTCCCGAGGAGGTTGCTCCACTTGCCAAGGAGCTAGAGAAGCAGGAAGTGGAATTGAGAGAGAAGACTCGACTGGAGCAGCTTCAACAGGAACAACGATTCATGGAAGAGAAGAATAAACGCAAGAAAGCCCTCCTATCGAAGACCATTGCTGAGAAGTCCAAACGGACACAGGCGGAAGCTATCAAACTGAAACGGATCCAGAAGGAGCTCCAAGCCCTGGATGACATGGTTTCCAATGACATCGGTATCCTGCGAAGCCGCATCGAGCAGGCCAGCTGGGACTACTCGGGTGCTCGAAAGCGTTTTGAGAAGGCAGAGGCCGAGTACGTGGCGGCCAAGCTGGACCTGCACAAAAAGACCGATGTGAAGGAGCAGCTGACGGAGCATCTCTACGCCATCATCCAGCAGAACGAGCAGCGCAAGTCCAGGAAGCTGGAGGAGCTCATGAAGCAGCTGGAGGTGGAGGCGGACGAGGAGGGGCTGGATCTCGAGATCGAGGTGGAGAAGATGCTTCATCAACAGGAAGAGGAAGCGAGGAGAGCCCAGGCGGCCGGGCAGGAGAACATGCCGGCTGCAGGGCAAGCCACGGGTGACTGCAGCGATGGTAGTGCCCGTACAGAGGGGGAAAAACCAAAGGACATTCAGCCTCCCGAATCAGGGAACGAGAAGGCTGGTCAAGACACTAAATTACAAAACACTAACTCTCATCATGAAGCTGTAGGCGATGAAGTAACTGTCTCTGTGTCgtgagtttaaaacaaaaaaccaaGGAGTCTAGCCAAATTtgatatgcaatttaaaaatcacatttagtCTGTTTAAATGGGTACTGTAATTCACCTGAAAAACTTCACTTAACTTGTGCAGTAAGTTTTTCTTCagtcattttattaatatgtggGATTTATGTAATCGAGTATTATTCAAAAGGATGTACAAAGCTAGCATTTGTCACTTCATCTGTCTTTttgcattttctgaaaatatattttggatcCTAACTCACCTGGACATATTCTGACGTGTGAGCCTTAGTGTGCGGGtcaatgttttatgtgtgtCTTGCAGTTGGGTAACGATGCATGCACTTGGAGTAAGTGTTCCTTGATTTCCTGTTCTTGCTTGTGTAGTTTACTCTAGTAACATGAATAGAAGCATGTCCCTTGAAATGTTTTGGATATGCATTCTAGATGTATACTGCAAAATACTTCaactttaaaatagtttaactaaaagcatttgaaaagcaTTATTCCTATTAGAGAGATCCTAGATGAATAACCCAGTTTACACTTTGAGAATCTCTTCAGTTTGCTCATCTGTTTGAGATCCTTACACAATTAGTTTCAACTCATCGGGAAAATGTAAGCAGCAGCAaccatttattatattaaatcagTATTTGCAGAccataacaaaaatgtatgcttCCTTTAAGACTCTTACTCTTAAAGGCATTATTTGGTGGCCATCTCTTTGCCGTAATAGGTGTGGTTTTAGATTATATTATTGTGTACCGAAGTGTCCTTTTTAGTTCAAATGAATGTAATACAACTGCTTCCTGCAGCTCACTCATGTTGTGCGTACTGCATAGTTTTGTGTATCAAACCTTAAGGTGAGGGCATTTCTAGACAGAATATATGTATCGTTTGAATGTAGGTGTCTCCTTGGACGAAATGGAAAAAGTAAGTTTCATGTTTTTAGAGAAGCTTGGGATACTCTAGGTTTTATGGTATTAGAGGTAGAAGCAGATAGGCAATGTACATGCACTATTTCTGCTTTTGTCAAGGgactttatttcaaatgttttttaaattgattattgtAATATTCATGTGAAATTGTTTCGTCTGTAGATTGTTGAACACTTTATATGTGGATCTCGCACATGAAAATGGTGGCTATACATATCACTGTAAATTAAACGTAATATACACTTCATATTCGATTGTGCTTTGCTGACCACAGGTACATTTGAATTACTGACACCATTATTTAAGATCATGACCTTCATTGTTATTGtaaatttcttattttgtataataaaatgtacctttttcTTCAAGTTAAA

Function

symbol description
gorab Predicted to be involved in non-motile cilium assembly. Predicted to be located in Golgi apparatus. Is expressed in notochord. Human ortholog(s) of this gene implicated in geroderma osteodysplasticum. Orthologous to human GORAB (golgin, RAB6 interacting).

NR:

description
PREDICTED: RAB6-interacting golgin isoform X3

GO: NA

KEGG:

id description
K19748 GORAB, SCYL1BP1; RAB6-interacting golgin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005074 True 2568 mRNA 0.44 5 14701348 14705852

Neighbor

gene id symbol gene type direction distance location
AMCG00005075 prrx1,LOC107726494 coding downstream 10395 14677660 ~ 14690953 (-)
AMCG00005072 pde4dip,LOC106569692 coding downstream 67368 14625244 ~ 14633980 (-)
AMCG00005073 NA coding downstream 76333 14621180 ~ 14625015 (-)
AMCG00005071 NA coding downstream 82837 14583143 ~ 14618511 (-)
AMCG00005069 NA coding downstream 148400 14544822 ~ 14552948 (-)
AMCG00005076 NA coding upstream 29987 14735839 ~ 14741930 (-)
AMCG00005081 NA coding upstream 65710 14771562 ~ 14784842 (-)
AMCG00005083 NA coding upstream 100065 14805917 ~ 14812269 (-)
AMCG00005082 ivns1abpa,ivns1abp,LOC107732388,LOC107553504 coding upstream 133542 14839394 ~ 14852815 (-)
AMCG00005099 LOC103137287 coding upstream 269399 14975251 ~ 14996206 (-)
G145173 NA non-coding downstream 246265 14426966 ~ 14455083 (-)
G145148 NA non-coding downstream 496859 14204259 ~ 14204489 (-)
G145146 NA non-coding downstream 517835 14180104 ~ 14183513 (-)
G145138 NA non-coding downstream 539372 14157580 ~ 14161976 (-)
G145131 NA non-coding downstream 638225 14062865 ~ 14063123 (-)
G145358 NA non-coding upstream 362561 15068413 ~ 15069113 (-)
G145387 NA non-coding upstream 399366 15105218 ~ 15105450 (-)
G145401 NA non-coding upstream 439946 15145798 ~ 15149592 (-)
G145434 NA non-coding upstream 547661 15253513 ~ 15254888 (-)
G145436 NA non-coding upstream 550037 15255889 ~ 15257664 (-)
G145046 NA other downstream 1364602 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 2353020 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 2544970 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 5794754 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 5853573 8836360 ~ 8847775 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 258562 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 797230 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 1252852 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 2837294 17543146 ~ 17546332 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 4036032 18741884 ~ 18764298 (-)

Expression


Co-expression Network