AMCG00005076


Basic Information

Item Value
gene id AMCG00005076
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 14735839 ~ 14741930 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005076
ATGGATTACATGGGAGCTCACCTGGCCTTCCGATCGCGGTGGAAAGAGACCGACGATGACTTGTGTCGGCACAGTATGTCCTTTGTTCTTCACAAGGCAATCAGGCATGACTTCTTTGAGAGCTACCTATACTTGCTGGAAAAACTCCCTCTGGTGAAGCTGTATGCCGTGACCAGCGAGGTCATCGATGGAGAAAAGCAGTTCTACGCCAGAGCGCAGAATTTCTACAAAGACGTGCCGGCTTCGGTGGAGGGGATGATGGGAGATTACCCATTGTTTGTCTCCCCTCTCTGCCAGGGCGCTGGCAAAGCAGGCACAGTGTGCGCTCTGGATTGTGGCTGCGGGATCGGAAGGGTCACTAAAAATGTCCTGCTGCCGGTGTTTGAGACAGTGGAGATGGCCGACATGATGGAAGATTTCCTGGTTTACGCTCACGAATGTTATCTTGGCAAAGACGCGGACCGCATTGAGACTTACTACTGCTACTCTCTGCAGGACCTCACGCCACCTGTGAAGAAGTACGACGTTATCTGGATCCAGTGGGTTGCATgtcaCCTTACTGACAGAGACCTGATGGAGTTCCTGCTGAGATGCAAAGCCAGTTTAAAACTCAATGGCGTCATCATCATCAAAGACAACATGGCCAGAGAAGGCTGCAGGCTGGACCCTGTGGACAGCAGTCTGATCCGACACATTGACATTGTGAAGAGAATCATCTATAAAAGTGACCTGGAAATTATTTACATACAGAAACAGGAAGGTTTCCCTGAGCAGATTGTCCCTGTTTGGATGATTGCCATCAAATAG

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K19579 NTM1B, METTL11B; protein N-terminal monomethyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005076 True 807 mRNA 0.50 4 14735839 14741930

Neighbor

gene id symbol gene type direction distance location
AMCG00005074 gorab coding downstream 29987 14701348 ~ 14705852 (-)
AMCG00005075 prrx1,LOC107726494 coding downstream 44886 14677660 ~ 14690953 (-)
AMCG00005072 pde4dip,LOC106569692 coding downstream 101859 14625244 ~ 14633980 (-)
AMCG00005073 NA coding downstream 110824 14621180 ~ 14625015 (-)
AMCG00005071 NA coding downstream 117328 14583143 ~ 14618511 (-)
AMCG00005081 NA coding upstream 29632 14771562 ~ 14784842 (-)
AMCG00005083 NA coding upstream 63987 14805917 ~ 14812269 (-)
AMCG00005082 ivns1abpa,ivns1abp,LOC107732388,LOC107553504 coding upstream 97464 14839394 ~ 14852815 (-)
AMCG00005099 LOC103137287 coding upstream 233321 14975251 ~ 14996206 (-)
AMCG00005098 NA coding upstream 301102 15043032 ~ 15056977 (-)
G145173 NA non-coding downstream 280756 14426966 ~ 14455083 (-)
G145148 NA non-coding downstream 531350 14204259 ~ 14204489 (-)
G145146 NA non-coding downstream 552326 14180104 ~ 14183513 (-)
G145138 NA non-coding downstream 573863 14157580 ~ 14161976 (-)
G145131 NA non-coding downstream 672716 14062865 ~ 14063123 (-)
G145358 NA non-coding upstream 326483 15068413 ~ 15069113 (-)
G145387 NA non-coding upstream 363288 15105218 ~ 15105450 (-)
G145401 NA non-coding upstream 403868 15145798 ~ 15149592 (-)
G145434 NA non-coding upstream 511583 15253513 ~ 15254888 (-)
G145436 NA non-coding upstream 513959 15255889 ~ 15257664 (-)
G145046 NA other downstream 1399093 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 2387511 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 2579461 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 5829245 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 5888064 8836360 ~ 8847775 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 222484 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 761152 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 1216774 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 2801216 17543146 ~ 17546332 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 3999954 18741884 ~ 18764298 (-)

Expression


Co-expression Network