AMCG00005077 (arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830)


Basic Information

Item Value
gene id AMCG00005077
gene name arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 14964414 ~ 14969242 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005077
ATGTCGAAGAACACCGTGTCCGACCGCTTCAGGAAGGTGGATGTGGACGAGTACGACGAGAACAAGTTTGTAGACGAGGAGGATGGTGGGGAGAACCAGCTGGGACCCGACGAAGGGGAAGTGGACTCTTTAATCAGACAATATCCTTTCAAACATGTCGCTTGTGCAGTAAATGTTGCGAGGCTGGGCCGTGGCCGGCGGGGGGACAGGCCGGGGAACTTGATGGGGGCTCTGCAAGCTGTCCTGAAAAACCCACCCATCAACACGAAGAACCAAAACGTCAAGGATCGGGCGGAGGGCCTGGTTCTGAAGGTGCTGAGCTCTTTCAAGAGTGGCGACATTGAGAAAGCTGTGCAGTCTCTGGACAAGAACGGTGTGGACCTCCTCATGAAGTACATCTACAAGGGCTTCGAGAAGCCCTCTGAAAACAGCAGCGCAGTCTTGTTGCAGTGGCAtgaaaagGCCTTATGTGCCGGAGGGGTCGGCTCCATCGTTCGAGTGTTAACTGCcagaaaaacagtttaatggCAGCCTGGAACAACTCTGCATTACAGAGGGATTTGCTGGTACAGAACCAAGAGCTGGTTCACAGGGCACTGTGAAGAGGACTCCTCCATGTCTGTTCTTCCTTCCTCCCTTCATCTTTGCTTGCTTAAAACTTCTTCCGTTCTATTATTTAACGGCTCTGATGCTTCCTACTCTGGAGCGACAGAGTCCTGCGCTTCTCTCCTGTCATTTCTGCCTTCCCAAATTATACAGCCTCACACAAATACTGCGCCGCCTGCtatattaagaagtttaagaTCTCTTTTCAAACTAAAAAGTAGCCAGTCTGCTAACATGTCGATGTCATCTGCACTCATTCTGGTTTGACATAGTCGTTCTCTTAATTGTAAATGAAGGCCAGTCGCTCTTCTCAGGAACCTCTAGAATAAAAGCTTCCTTAGTCGGAGAGTAGTGTTCTTCGAGCAGACTGGCCATTTCAGGGGATTCATTTTTGTATCCTAGAATATCCTCTATCTGTTAACATTATATTATACCAACTAGCTTAACCATTCCAGCTCACAGATGGAGCCACAGCTTCTGATGGAAGCTGCAGTGTGACTTCTGCTGCAGGGTCATGTCTAGTGTGAACGAACGACCCTCCGTGTGGCAAAAGATTGCATTTGTATGCTTCTTGGGGCCATTATGAGAATAAGggcaatgcattgtttttttgtgcttaaAATTTAATGGTATCACCTTAAAAGGGATTAATTTATTGCTGTCAAAAACAAGTAAACCATTTAGCACAAGAAAATATGCCAAATAATACTCAGTACATGTTCATGCAACAAATCTATACACAACCAATCACAGTTTACCTGGATTTAAGTCTGTGAAATTACGGTTTGATCATTTCTTGTTAGgctgatttattttgcttattctGTTTTCCAAATGCATTGTAAATCAATTACCTTATGCATGAGATGTCtctctattttctgttttctaccATGCTTACTGTACCTGGTGATCCGATTGTATCTGGtatgtttaaacacaaaaaaaaatccaaaacattatttaattttaagtatttGACCTATAAATTGCATCAGCCTTCtatctaatgttttttttgccaaaacaatgttttgtttttggtttttatcCATATAATCTGCTGGGTATCACAAAAGCCGAGTTAATTGTTGGCCCAATTGATCAAGCTTCTTATGTTCAATTACAAAGTATGTCAACTGTCAGATCAGTATTACTCTACTTCATGTGTATCAGCCAAAAGTAGATTTGCTGCACAATGTCTTTAAATCTCTGAAGATGTCATTGGACCAAAATATCTCCAGTAATTTGGGTTATAGTAAGTCTTGCTTTGCTGATAAATCCGTGTGTTTTGTACATTAGCCTCAATAGGACATACAGAACAAACCgtgcaataaaaacaatgtaaaatctTTTAGGataattgttttacataaacaaaaacctgATTCCCAGAGTTAACATTACCAAAACTATTATAGTTTTCAGACTGGAGAATATTTTATATTGGTACTATTTGTATGTTGTGATCAAATCAATTGTGGATTTTGCATATTATGTCTAGCCAAGCACTTGGATCTGTAACAATTGATTGACAATACAGGCCCAGCCTGCAGTGGAGTTGGCTCACGGGttgatgtttaaattgtattctgtaTCGCGTTGTTTGGAGAGAGAACactttgatttgtatttctcATTACATCATGTTATGGTGGACAACTATTTTCTATGTTTGTTCATCTTACAAAATTTAAATGATCAACAATAGAAAGGCTAAACAAATTCTCATATTGATTTGTTACAGAAATGTTGGTTGCCCTTGTTTGTGACCAAGTGCAAATATACCCATCTGGTTTACAGACTGCCTTATCAAATATTCCTTTTATGTATGTGCTTTTgtgatacaataaaaaaatatatagttgtgACACACTTTAGTTGTCTGATatgttcattttcatatatagaGTTGAATTTCTTacctgtaattttttttttttttctccacactgATTGTACTTTTCACAATAgttcattttgatttctttgtgTTATTTAGCAGAGTGGGATATGTTTAATGCTGCATTAGTAAATAGCTATATTTAGGCTGTTTTTgcatcataataaaatacagtgaatcagtga
>TU182803
GCCATTGTCCTTAACGCACTTCTGCACAGGGAACTTGATGGGGGCTCTGCAAGCTGTCCTGAAAAACCCACCCATCAACACGAAGAACCAAAACGTCAAGGATCGGGCGGAGGGCCTGGTTCTGAAGGTGCTGAGCTCTTTCAAGAGTGGCGACATTGAGAAAGCTGTGCAGTCTCTGGACAAGAACGGTGTGGACCTCCTCATGAAGTACATCTACAAGGGCTTCGAGAAGCCCTCTGAAAACAGCAGCGCAGTCTTGTTGCAGTGGCAtgaaaagGCCTTATGTGCCGGAGGGGTCGGCTCCATCGTTCGAGTGTTAACTGCcagaaaaacagtttaatggCAGCCTGGAACAACTCTGCATTACAGAGGGATTTGCTGGTACAGAACCAAGAGCTGGTTCACAGGGCACTGTGAAGAGGACTCCTCCATGTCTGTTCTTCCTTCCTCCCTTCATCTTTGCTTGCTTAAAACTTCTTCCGTTCTATTATTTAACGGCTCTGATGCTTCCTACTCTGGAGCGACAGAGTCCTGCGCTTCTCTCCTGTCATTTCTGCCTTCCCAAATTATACAGCCTCACACAAATACTGCGCCGCCTGCtatattaagaagtttaagaTCTCTTTTCAAACTAAAAAGTAGCCAGTCTGCTAACATGTCGATGTCATCTGCACTCATTCTGGTTTGACATAGTCGTTCTCTTAATTGTAAATGAAGGCCAGTCGCTCTTCTCAGGAACCTCTAGAATAAAAGCTTCCTTAGTCGGAGAGTAGTGTTCTTCGAGCAGACTGGCCATTTCAGGGGATTCATTTTTGTATCCTAGAATATCCTCTATCTGTTAACATTATATTATACCAACTAGCTTAACCATTCCAGCTCACAGATGGAGCCACAGCTTCTGATGGAAGCTGCAGTGTGACTTCTGCTGCAGGGTCATGTCTAGTGTGAACGAACGACCCTCCGTGTGGCAAAAGATTGCATTTGTATGCTTCTTGGGGCCATTATGAGAATAAGggcaatgcattgtttttttgtgcttaaAATTTAATGGTATCACCTTAAAAGGGATTAATTTATTGCTGTCAAAAACAAGTAAACCATTTAGCACAAGAAAATATGCCAAATAATACTCAGTACATGTTCATGCAACAAATCTATACACAACCAATCACAGTTTACCTGGATTTAAGTCTGTGAAATTACGGTTTGATCATTTCTTGTTAGgctgatttattttgcttattctGTTTTCCAAATGCATTGTAAATCAATTACCTTATGCATGAGATGTCtctctattttctgttttctaccATGCTTACTGTACCTGGTGATCCGATTGTATCTGGtatgtttaaacacaaaaaaaaatccaaaacattatttaattttaagtatttGACCTATAAATTGCATCAGCCTTCtatctaatgttttttttgccaaaacaatgttttgtttttggtttttatcCATATAATCTGCTGGGTATCACAAAAGCCGAGTTAATTGTTGGCCCAATTGATCAAGCTTCTTATGTTCAATTACAAAGTATGTCAACTGTCAGATCAGTATTACTCTACTTCATGTGTATCAGCCAAAAGTAGATTTGCTGCACAATGTCTTTAAATCTCTGAAGATGTCATTGGACCAAAATATCTCCAGTAATTTGGGTTATAGTAAGTCTTGCTTTGCTGATAAATCCGTGTGTTTTGTACATTAGCCTCAATAGGACATACAGAACAAACCgtgcaataaaaacaatgtaaaatctTTTAGGataattgttttacataaacaaaaacctgATTCCCAGAGTTAACATTACCAAAACTATTATAGTTTTCAGACTGGAGAATATTTTATATTGGTACTATTTGTATGTTGTGATCAAATCAATTGTGGATTTTGCATATTATGTCTAGCCAAGCACTTGGATCTGTAACAATTGATTGACAATACAGGCCCAGCCTGCAGTGGAGTTGGCTCACGGGttgatgtttaaattgtattctgtaTCGCGTTGTTTGGAGAGAGAACactttgatttgtatttctcATTACATCATGTTATGGTGGACAACTATTTTCTATGTTTGTTCATCTTACAAAATTTAAATGATCAACAATAGAAAGGCTAAACAAATTCTCATATTGATTTGTTACAGAAATGTTGGTTGCCCTTGTTTGTGACCAAGTGCAAATATACCCATCTGGTTTACAGACTGCCTTATCAAATATTCCTTTTATGTATGTGCTTTTgtgatacaataaaaaaatatatagttgtgACACACTTTAGTTGTCTGATatgttcattttcatatatagaGTTGAATTTCTT

Function

symbol description
arpc5b Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation and cell migration. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in actin cytoskeleton. Predicted to be part of Arp2/3 protein complex. Predicted to be active in cytoplasm. Orthologous to human ARPC5 (actin related protein 2/3 complex subunit 5).
arpc5 A structural constituent of cytoskeleton. Contributes to actin filament binding activity. Involved in Arp2/3 complex-mediated actin nucleation and cell migration. Located in extracellular exosome and focal adhesion. Part of Arp2/3 protein complex. Biomarker of lung non-small cell carcinoma and lung squamous cell carcinoma.

NR:

description
actin-related protein 2/3 complex subunit 5-like

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K05754 ARPC5; actin related protein 2/3 complex, subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005077 True 2694 mRNA 0.39 4 14964414 14969242
TU182803 False 2344 TUCP 0.38 3 14964579 14967623

Neighbor

gene id symbol gene type direction distance location
AMCG00005082 ivns1abpa,ivns1abp,LOC107732388,LOC107553504 coding downstream 111599 14839394 ~ 14852815 (-)
AMCG00005083 NA coding downstream 152145 14805917 ~ 14812269 (-)
AMCG00005081 NA coding downstream 179572 14771562 ~ 14784842 (-)
AMCG00005076 NA coding downstream 222484 14735839 ~ 14741930 (-)
AMCG00005074 gorab coding downstream 258562 14701348 ~ 14705852 (-)
AMCG00005099 LOC103137287 coding upstream 6009 14975251 ~ 14996206 (-)
AMCG00005098 NA coding upstream 73790 15043032 ~ 15056977 (-)
AMCG00005100 NA coding upstream 105430 15074672 ~ 15080833 (-)
AMCG00005089 NA coding upstream 124713 15093955 ~ 15101859 (-)
AMCG00005087 NA coding upstream 148515 15117757 ~ 15119251 (-)
G145173 NA non-coding downstream 509331 14426966 ~ 14455083 (-)
G145148 NA non-coding downstream 759925 14204259 ~ 14204489 (-)
G145146 NA non-coding downstream 780901 14180104 ~ 14183513 (-)
G145138 NA non-coding downstream 802438 14157580 ~ 14161976 (-)
G145131 NA non-coding downstream 901291 14062865 ~ 14063123 (-)
G145358 NA non-coding upstream 99171 15068413 ~ 15069113 (-)
G145387 NA non-coding upstream 135976 15105218 ~ 15105450 (-)
G145401 NA non-coding upstream 176556 15145798 ~ 15149592 (-)
G145434 NA non-coding upstream 284271 15253513 ~ 15254888 (-)
G145436 NA non-coding upstream 286647 15255889 ~ 15257664 (-)
G145046 NA other downstream 1627668 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 2616086 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 2808036 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 6057820 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 6116639 8836360 ~ 8847775 (-)
AMCG00005111 NA other upstream 533840 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 989462 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 2573904 17543146 ~ 17546332 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 3772642 18741884 ~ 18764298 (-)
AMCG00005214 NA other upstream 4043835 19013077 ~ 19024461 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015376 arpc5a coding NC_007113.7 CM002886.2 20967673 ~ 20975677 (+)