AMCG00005081


Basic Information

Item Value
gene id AMCG00005081
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 14771562 ~ 14784842 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005081
AGGACGAGCTGAAGCCGAACTGAAGAACTTCAGCCCTCACTACAGACGCCAGTACTCTGTGGCCTTCTTCTCTCAGCTGCACGATGAGGTCGAGCAGCACAAGACAGCACAGACACAACTCCTCAAACAAAGGGAGCCTCTAGAGCCGGGGAAGCCTCTGTATGAAGAGCATATGTTGCATTATATCGATGAAATAAAGAAGTGGAAGGAGAGATTCGTGGTGGTCCGAGCCAATTACAGCATCGAGTGTCACGACAACTACGAGGCATTCGTGAAAGGAGCGCAAGCCAGATACAGGCTGTTGCCAACGGGAGGCACTGCCGTGGTGTCTTTGGACAAGTACAACGCGTTAGTGGACCGAGCCTTCCCCGACCCCAACAGTGTGAGTGAAGAGACCTCACCTCCCCTGGTCACCATGCCCGGCCCATTTCCTGTTTTCTTGCGGCTGCCTTACCGGAAGGACCACTACTTCTGTTTCACTAACGAAGAGTCCCAGAATCACTTCGTTGGCATTCTTGGGGACTGCATCCGGCACCAGAACCACGATTTTCTAAAGCATAACACGTGTGAAGTGCAGGCGTTCCTGAAGGCAGTGCAGTTTTACAGGCAGGAGAAGGGCCACTACGAGTCCTGGGACATGCTCATCGGCAGTGATGTGCGGGTGCTGAGCAACCTGGTGATGGAGGAGCTGCTGCCCACACTGCAGACGGAGATGCTGCCCAAACTCAAGGGCAAGAAGAACGAGAGGAAGAGAGTCTGGTTTGCTACGTTGGAGGCGGCCTACATCTTGGTCCAGGAGCAGGTCTCTGAGGGGCTGAACACTTTGAAGGACACATGCAAAGAGACAGCCAAGCAGTTGGAGTCCCGCATCCGCTCAGACATGGACCAGATACTCAACTCCAAGAACTTCCTGGCTGGGAAGTTGAAAGCCACCGTGTCGGAGCCGGCTGTGAAGTGCTGCACTGAAAGCGTCCAGCCCTACCTGGCCTCAATACTGGAGGAGCTCATGGGGCCCATCAGCTCGGGCTTCAGCGATGTCCGGGCCCTCTTTGAGAATGAGATTGACGCACTCAACCAGAATTTCCAGGAGCGCAACAACCCGGAGGTCCTGAAGAAGCGGGTGGAGGTCCTCCGAgagcagctgcaggagctgaGGAACCGCTTCAAATACTCCAACACCAGCCGCCTGGTCCACAGCACCCAGAACCACATGCAACAGCTGATGGAGAATGTCGCCTTCACATTGGGACACCTACTGTCCAGCACACTGAAGGACAGCTCAGGCAAGGTCCCCACTGCCATTGAAAAGGCCAAGCAGAGAGTGCTGAAGCAATATGACTATGACAGCAGCACCGTCAGGAAGAAAATCTTCCAAGAGGCTCTAATAGACATCACACTGCCCACCATCCAGAAGAGCCTGGCTCCCAGCTGTAAACCCgagCTTCAAAAGTTCGagcagtttatttttgctgATTACAGCAACTTCATCCAAGTGGAAAATGTCTACGAAGAAATACTGCTGCAGACTCTTGAGAATGAAGTTGGCAAAGTGGTGAAAGAAGCTGCCAGTGCCAAGAAGCACAACCTGTTTGTAGACAGCATGGACCTTCACTGTGTGAGCCAGTCCAGCCTGACTGAGAGCAAGACGCCACCAGGGACCACCCATGCCAGTCCAGCCAAACAGCCAGCCTCTCCTGCAGAAAAACAACCCCTTCAGCCCGAAGACTCGCAGAGTGCGTTGGTGGCGGAAAAGCAGGAAAGCGAGGCCCCGACTACACCGCAGCAGGGTGATGCCACAGCAGCCAGCACAGATACAGCGGGCACGGAGGAAGCTCTGGCAGACAACATGGCATTGCTCGGCCTCGGTTCTGCCATGGAGGAATCTCCCAACAAAGATGCACTGTTACTCACGGCCCGACAAGAGTCCGTACCTGACACAGCAGGAGAAGTGACAGAAGGGGAAAAGATTGAAggaaaagaagacaaaacagAGGAACACCCTGTCCACTTAGAGCCACAAACTCCTGCCAGCATAAACAACATTCGGGAGCTGATGGCCGAACAAGAGGACCCAGAGGAAGAGAACAAGGACTGTGAGGACAAAGAGCCCGAACAGGAATGAAGTCCAGCCGCTCGAAGGAGAGTATCAAACCAGAAGAGCAGAGCAATGCTGCCACCACAGCCAACTTGAAAGAGTTAAATGAAGATTTAGATGGCATATGCTATTGCTTATAAGTCCATGAGTGTGAGATAGATTACCTGCACTTGCATTTAGCCAGGACTGGAATGCTAGACTTGTTTGAGCTTAACTTAAACTTAAATATATTCTTTTATCATACAATTGCAAATGCGAATTGTGACGCTGATGTTTTTCCTAGAGGTGCTTACAAGAACCAGTCAAGTGTTACTGCTCCAAACCACAGCGATATCGGCCACTGGGGGGAAGAAAAGCCGTTCCCCAACATGTCTGAACgctattttaaattttaatttaactgactGAACAGATGACAAATCTATTACTGGGATTTAATAATGTTTACCTTTTAACTGTAAAAGAATTGGCCCTCGTAGACTGACACgcgctttttattttaattttggttaGGATCTTATATAAGTGCCcagtatttgtaaataatttacattttcaaagatatATATGTCTGTTTGGCAAGGCAAAggttaattgattttaaattagtaaTCATGAAGTCACTATTACTTGTGCTAACTCTACCCTGTTCAGGTGACCAAATTCAGAAATATTTagaaacaatatttgtttagaTAATTTGTATAGACTTTTATAATTGTCctcatattttaatgttctcATTTGATAGCATCTTCAAATTGTTGTTAACATTCTGTCACTCACAGACCAATTATATGGATCCAGATATCCATTATGTGATGGGCACTGTATTCAAGATAGGTCAGGCTGTTATGAAAATAGAAGCATGTTTTTCGTATTGGTTTAGTATAGGGTTTTGATCTACTTTAATGCTTCATTTTGCTAGAATACAGTAAGATTTCATTAAGATGGTTACTCAAGAATCACTATCAAAATTGATTATTCTTGAGATTAAGTTAGTGACATACTGGATAAAAAGGGAACTGGAATGTTTTTTCACCTTTAATTACTAAGAAAGCTTAGTCACTTACTTCATGTGATGTCCAACTTGACCTTCAGCCTTCGTTTGTAATCGATCTCAGCCTCAAGGGTCTGTGTCTCTGAGCAGTGTTTTCAATCTCTCCAGCAGCTCCTAATTATTCCCTTTATGTTGCAATATTTGACATGGTAGCATAAAAATACAGGACCTGCAACACAACTGCACAGATTCACAACTCTTTTGCAGACTGTTCTTACAAAGAACTCATTTAGAACCATTACACACATTGTAACATTAGATTTACTGGTTGTAAATGCTACCAAACGCCTTACCTGGACAAGCTGCAAGCCAACTTATGTGTCTCTTACTTTATGTTCAATTGTTCTGAAATTTCATCTTGGGCTGGGACCATAAATTATGCTTTTTCTGAAGCAATTCAGGTAAAACCCCAGCACTGATCACGGTAAAGCTGTGAGACATtgacaaatcaataaacatgaATTTACTAGAGGGGTCCAACCCTGGGGATAGGAAGTGGAAGACAGACAAGTTAATGTCATTGACCTTCCCTGAAACACAAAGCAGTACTGTTGTAAAAGCATTTGAACCCTTTTGTGCAACAGGCTGCGAAAAGGCCTTCTTAAAGATGAAATATAGCTCCCAGGGTATTTACTATAACAAAAggcaactaaataaataagaggaagcttcaaagcaaacaaacaattacattccTTATTATTACACTATGGTCATTTTCCTATGTTCAGTAGATTAGTAATGAGTCTTTCAATAAGGAATAACCTATGCTAACTCACATGTCTTTAAAATTACTGATTGGGATGCAATGTTAATGTGTCCATTAACATAGTGAACACTAAATTCCTTCTTCATActataaactaataaaaacaaaagaactgcAAATACAGTATAAGAAACACTGGTCAGTTTCTGTATTTACATTGCTCTGAATGAAGAAGTTATTAAAATGACCTGTAAATGCTGGTAATGCATGAATGAAGAGATTctcaattcattttaaacacatttgtaatacaGTGCCTAATAAAAAGAAGAACCATTTTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005081 True 4207 mRNA 0.45 13 14771562 14784842

Neighbor

gene id symbol gene type direction distance location
AMCG00005076 NA coding downstream 29632 14735839 ~ 14741930 (-)
AMCG00005074 gorab coding downstream 65710 14701348 ~ 14705852 (-)
AMCG00005075 prrx1,LOC107726494 coding downstream 80609 14677660 ~ 14690953 (-)
AMCG00005072 pde4dip,LOC106569692 coding downstream 137582 14625244 ~ 14633980 (-)
AMCG00005073 NA coding downstream 146547 14621180 ~ 14625015 (-)
AMCG00005083 NA coding upstream 21075 14805917 ~ 14812269 (-)
AMCG00005082 ivns1abpa,ivns1abp,LOC107732388,LOC107553504 coding upstream 54552 14839394 ~ 14852815 (-)
AMCG00005099 LOC103137287 coding upstream 190409 14975251 ~ 14996206 (-)
AMCG00005098 NA coding upstream 258190 15043032 ~ 15056977 (-)
AMCG00005100 NA coding upstream 289830 15074672 ~ 15080833 (-)
G145173 NA non-coding downstream 316479 14426966 ~ 14455083 (-)
G145148 NA non-coding downstream 567073 14204259 ~ 14204489 (-)
G145146 NA non-coding downstream 588049 14180104 ~ 14183513 (-)
G145138 NA non-coding downstream 609586 14157580 ~ 14161976 (-)
G145131 NA non-coding downstream 708439 14062865 ~ 14063123 (-)
G145358 NA non-coding upstream 283571 15068413 ~ 15069113 (-)
G145387 NA non-coding upstream 320376 15105218 ~ 15105450 (-)
G145401 NA non-coding upstream 360956 15145798 ~ 15149592 (-)
G145434 NA non-coding upstream 468671 15253513 ~ 15254888 (-)
G145436 NA non-coding upstream 471047 15255889 ~ 15257664 (-)
G145046 NA other downstream 1434816 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 2423234 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 2615184 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 5864968 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 5923787 8836360 ~ 8847775 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 179572 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 718240 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 1173862 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 2758304 17543146 ~ 17546332 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 3957042 18741884 ~ 18764298 (-)

Expression


Co-expression Network