AMCG00005083


Basic Information

Item Value
gene id AMCG00005083
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 14805917 ~ 14812269 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005083
CCTCTCTACGCAGTTTACGGTGCTTTAGTAAAATGGCGGAGCTGAAGGAAGGAGACGCTTTACAGCTACACCAGGAGGACGTCGACGCAAATAgagCTTCTAGCGAATCTAGGTCTGGAGAGGGAGAAGCGGAGGAGGTGAAGTGTGAGCAAGACGAGAATGCAACCAGTGCCAGTGGAGATGCCCATGACAGTGGCGTCAGCAAGGAGCCAGAGCTGGATAATGGGGAAGCATCTGCATCTTGCACAGAGAGGCACATTTCTATTCAGACTCAGCTGCAAGGACTGGAGAAGCTGGTAGACTTAAAAGGAGCTGGTAGGAAAGCATGCCCACTATGCCCCGAGGAGAAGTTTAAAGCCTGTTACAATCACAAACTGCGCCGCCACTTACAGAATCTGCACTGGAAGGTTTATGTAGAGTTTGAAGggCACAGGATGTGTATCTGTCATCTTCCTTGCAGACAACTGAAGCCAAACCTGAATGGAGATCAGCCTTCAAGCCGATTGGTGGCTCATTACCACTGCATTGTGTGTTCGGTGACCATCGCTCGCAAGACTGACATGGTTAGTCACCTCAAACGCCACGTGAACAAAGGGGAGACCGAAGCCAGCTACACTGGAGAGACGGACTCCTGTGAAATTATGAAGGAGCTGGGCACCAACGTCCAACTGCTTCCGAACTACAGCACTCCACAGAAGAGCGACACCTACTTCAACCGCAAGATGAAAGTAAACAGACAGCTGGTGTTCTGTTCTTTGGCGGTTCTGGCAGAGGAGCGAAATCCACTAGAGTGCCTGGATGCTTTTGGAGCAACAGGCATCATGGGCTTGCAGTGGGCCAAGCATCTGAGCAGCGCGGTGAAGGTCACCATCAGCGACATCAACGAGACGTGTGTGAAGATGATCAGGGAGAACTGCCACCTCAATCACATGAGGGCGGAGGGAGGCCGTGGCCCCCGGCATGCAGACCCCGAGGGcaccgaggaggaggagggtcaCGTAGCCTCAGTTGAAATCATCAAGATGGATGCCAATGTCATCATGCACCTGCGCTCCTTCGATTACATaCACCTGGACCCGTTTGGTACAGCCGTGAATTATCTCGATGCCGCCTTCAGGAACGTACGCAATCTGGGCATCGTGTCGGTGACCTCCACGGACACTGGCTCTCTTTACTCCAAAGCTCTGAACATGACACTGAGGCACTATGGCTCGGCGCGCTGTAACAAGGGCATCGAGGTGCTGTTGGCAGTGGCACTGGAGCACTTTCTCCTGGTGGTGGTGCGAGTGCTGAGAGGCCCCACACAGGCGGACGAATCTGCCAAGAAGATCCGCCAGCTCATCCACTGCCAGTGGTGTGAGGAGAGGGTGTTCCTGAAAGCTGGCAGCATGGTTGAGGAAAACCTGTACAGGCAGCTACCCTGTAACTGCCATGAAAGCATGCCGGGCAAAACAGCGGTCGAACTGGGGCCACTCTGGGCGGGTCCTCTTTTCAACACCGGCTTTCTGAGAAGGATGCTATTTGAAGCAGTTCAGCACGGGATGGATGACATCCAGGCTCTTGTGAAGACACTGCTCTGCGAGTCGGAGTGCACGACGCTCAAACAATTCTCCATCACCAGCCCACTGAAACACATCAACCAAGAGGAATGCGGGGTGTTCATTCAAATCTCGCAGAGACCAGAAGACACGGCCACGGCTGAACAGTCAGCGATGCAAGgaaagaggaaaacaaatgaagaaacGGGGAATATGCTGAAGAGGCAGAAATCGGAGCCCCCTATGGAACATCCTCCATTCTACTACAGCATCCATCGCCACAGTATCCGGGGAATGAACATGCCAAAGTTGAATAAATTCCTGCAGTACCTCACGGAAGCCGGGTTCAGAGTGAGCCGGACTCATTTTGACCCGACGGGAGTCCGCACAGACGCCACCCTGGCCCAGTTTAAGTCGGTCCTCACCCAGTACAGCGTGCCCACCTACACTGCGGGCCAAACCGGAGGCCACAGCGTCGGCACTGATGAGGGAAACTGGAAGGTTGAGTGACTGGTCACCTTGAGTTCTCCctgcactgaaacaaaatgtgacTTCATCGCTAGGCAAGTGTCACTGGAGTTTATTTTCTTAGCATGGTTTCCAGGTAATCTGTAAACAAATGATCACAAccacatgaaataaaatcaacatcTAACCAGGCCCTGCTTTGCTGTGCTCATGGATAAGCCTATCGCCTTCCTTCTGGTTGTAATGTGAGGAGagtattattgtgtattttgtcaGCAGTGTTGACCTGGTGCAACCTTGCTCACCCTTTATGCTTCTTTGAAATCAGCTTTAGGATATTTTCAGGAACAGGTTTTGTTGCAAGAGCATGCAAGACTAATGATCCAGAGAACTGAAAAATACAGATAATTGATCAAACCTTTCTATCAAAAGGAAAGAATCATCACAGCTCTCTGGCACCTCTGCATTTAAGATCCGTTTACTGCAAAGATGAGCTTAACCGATAGTTGATTTGTGTCAGACTTTCCTTTCGAACTTTAAAggcaattaaataatcaaaaggatgtctgaatttgtttttatcccCTCAGTGTCATTCTTTGTGTtcagtatgtattgtttattcttttttcttaaaatgtgttaacTAGAAGTAAGTGTAAAGGGTTTATTAAAAGCTTT

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03018 RNA degradation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005083 True 2687 mRNA 0.50 16 14805917 14812269

Neighbor

gene id symbol gene type direction distance location
AMCG00005081 NA coding downstream 21075 14771562 ~ 14784842 (-)
AMCG00005076 NA coding downstream 63987 14735839 ~ 14741930 (-)
AMCG00005074 gorab coding downstream 100065 14701348 ~ 14705852 (-)
AMCG00005075 prrx1,LOC107726494 coding downstream 114964 14677660 ~ 14690953 (-)
AMCG00005072 pde4dip,LOC106569692 coding downstream 171937 14625244 ~ 14633980 (-)
AMCG00005082 ivns1abpa,ivns1abp,LOC107732388,LOC107553504 coding upstream 27125 14839394 ~ 14852815 (-)
AMCG00005099 LOC103137287 coding upstream 162982 14975251 ~ 14996206 (-)
AMCG00005098 NA coding upstream 230763 15043032 ~ 15056977 (-)
AMCG00005100 NA coding upstream 262403 15074672 ~ 15080833 (-)
AMCG00005089 NA coding upstream 281686 15093955 ~ 15101859 (-)
G145173 NA non-coding downstream 350834 14426966 ~ 14455083 (-)
G145148 NA non-coding downstream 601428 14204259 ~ 14204489 (-)
G145146 NA non-coding downstream 622404 14180104 ~ 14183513 (-)
G145138 NA non-coding downstream 643941 14157580 ~ 14161976 (-)
G145131 NA non-coding downstream 742794 14062865 ~ 14063123 (-)
G145358 NA non-coding upstream 256144 15068413 ~ 15069113 (-)
G145387 NA non-coding upstream 292949 15105218 ~ 15105450 (-)
G145401 NA non-coding upstream 333529 15145798 ~ 15149592 (-)
G145434 NA non-coding upstream 441244 15253513 ~ 15254888 (-)
G145436 NA non-coding upstream 443620 15255889 ~ 15257664 (-)
G145046 NA other downstream 1469171 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 2457589 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 2649539 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 5899323 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 5958142 8836360 ~ 8847775 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 152145 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 690813 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 1146435 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 2730877 17543146 ~ 17546332 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 3929615 18741884 ~ 18764298 (-)

Expression


Co-expression Network