AMCG00005087


Basic Information

Item Value
gene id AMCG00005087
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15117757 ~ 15119251 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005087
ATGGCAGACACTTTGAGCCAAATCTCCGATGTAGAAATTGATGCAGATGGGGTGTTTAAATACATCCTCGTCAAGGTGAAGGTCAAAGGTGGGACGGAATGCAAAGCTATAGTGAGAGGCACGAAGAGTGCGGAGTTCCACAatcatatatttgaaaaggTGAACCCCGAGATGGAAAAACTAGGAGTGGAGTCCTCATGTCTGGGAGGTGGCAAGATTGAACACAACAGCAAGGAGAAGAAGATCAGAGTGTTTGGACTATCGACAGGTTATGGCAAGGCCGATCACTCTGTCACTGTGGAGAAGCTGAAGTCCATCTTTAAAGACTATGACATTTCCTGGTCagatgacaaaaaataaagcaaagacaAACCACTTGGGAATGGTCAATGTTGCACTAATGTAAATATGCCAATGTTAATATTATTCAGAAAATTGTTAGATGAAAGTGATTTGATGAAATTATAACTATACTATAATCATTTAATAGATAATTCTACTTATGTTTTGGAAGTACCCCTAATCCTAGTGGGCTAAAAAGAATACTGAAAGAACCAGGTCTCAGAATggagttaaaaggaaaataaataactgtctcTATTGAGTGTTTGggacatatatatttaaacaaaaaagaatgaaCAAAGCTCGTCAAAACACTGTAGAATGAGTTGGCACCATCAACAGTAACTCtactgtatttgaaaaacattatatacagtatgcTAAATAAGATGTGCCTTTTTCTCAGCTTAAATCAATATTGGCATTAAAATAACTTGACATGTTCACGTCATTAAACTGCACTGCTGGAATTTTCCCAAACGTTGTGTGCTCTGCATCCGAAAAGCCATGTGTAAGAGTG

Function

GO: NA

KEGG:

id description
K01112 PHPT1; phosphohistidine phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005087 True 865 mRNA 0.38 3 15117757 15119251

Neighbor

gene id symbol gene type direction distance location
AMCG00005089 NA coding downstream 15898 15093955 ~ 15101859 (-)
AMCG00005100 NA coding downstream 36924 15074672 ~ 15080833 (-)
AMCG00005098 NA coding downstream 60780 15043032 ~ 15056977 (-)
AMCG00005099 LOC103137287 coding downstream 121551 14975251 ~ 14996206 (-)
AMCG00005082 ivns1abpa,ivns1abp,LOC107732388,LOC107553504 coding downstream 264942 14839394 ~ 14852815 (-)
AMCG00005088 NA coding upstream 35177 15154428 ~ 15162185 (-)
AMCG00005093 NA coding upstream 46195 15165446 ~ 15182844 (-)
AMCG00005092 olfml2b,LOC101471195,LOC102214710 coding upstream 123310 15242561 ~ 15249295 (-)
AMCG00005108 NA coding upstream 166452 15285703 ~ 15304821 (-)
AMCG00005109 NA coding upstream 192342 15311593 ~ 15333520 (-)
G145387 NA non-coding downstream 12307 15105218 ~ 15105450 (-)
G145358 NA non-coding downstream 48644 15068413 ~ 15069113 (-)
G145173 NA non-coding downstream 662674 14426966 ~ 14455083 (-)
G145148 NA non-coding downstream 913268 14204259 ~ 14204489 (-)
G145146 NA non-coding downstream 934244 14180104 ~ 14183513 (-)
G145401 NA non-coding upstream 26547 15145798 ~ 15149592 (-)
G145434 NA non-coding upstream 134262 15253513 ~ 15254888 (-)
G145436 NA non-coding upstream 136638 15255889 ~ 15257664 (-)
G145441 NA non-coding upstream 142096 15261347 ~ 15266948 (-)
G145680 LOC101077364,LOC107383562,LOC104957225 non-coding upstream 1255411 16374662 ~ 16375417 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 148515 14964414 ~ 14969242 (-)
G145046 NA other downstream 1781011 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 2769429 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 2961379 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 6211163 8872885 ~ 8906594 (-)
AMCG00005111 NA other upstream 383831 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 839453 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 2423895 17543146 ~ 17546332 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 3622633 18741884 ~ 18764298 (-)
AMCG00005214 NA other upstream 3893826 19013077 ~ 19024461 (-)

Expression


Co-expression Network