AMCG00005088


Basic Information

Item Value
gene id AMCG00005088
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15154428 ~ 15162185 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005088
ATGCTGgaagattttaaaatggaagaagACAAGATGACAAGTCCATCCTCTCTATCCTCAGTGCTTGATTTGAACCAGAAAGCTGTGTGCCAGGGCTGCCACCGGCTGATCAGTGACAAGTACCTCCTCAGAGTCAATGAGCGCTTGTGGCACGAACACTGTGTGCATTGTGCAGCCTGCAGAAAACCCCTAGAAGACACTTGCTTTTTAAGGGAGAAGAGACTGTACTGCAAACAGGACTATGACAAATTGTTTGGAGTGAAGTGCAGCGGTTGTTTGGAGGTGATTGCTCCAGCGGAGTTCGTGATGCGCGCCCGCAAGTCAGTGTACCATCTGCAGTGCTTCTGCTGCTGCGTGTGCGAGCGGCGCCTACAGAAGGGAGACGAGTTCGTCCTGAAGGAGGGCCAGCTGCTGTGCAAGAGCGACTACGAGAAAGAGCGCGAGCTTCTGAGTCTCATCAGTCCGGCCTCCTCTGACTCGGGCAAAAGCGACGAGGAGAAATCCGTGACTAGAGGAAAGGCCGGGGAAGACGCTGAACACAAGAGGCCTAAACGCCCCAGAACCATTCTCACAACCCAGCAGAGACGGGCCTTCAAAGCCTCTTTTGAAGTCTCCTCGAAACCTTGTCGCAAGGTAAGAGAGACATTGGCGGCCGAGACGGGCTTAAGTGTGCGTGTCGTACAGGTGTGGTTTCAGAATCAGAGAGCTAAGATGAAGAAGCTTGCCAGacgacaacagcagcagcaacagcaagatCAACACAACCCTCAGAGGTTACATTCAGCACCCACAAACAGAGGAGTCAATCCAGATATAGACAACATAAACCCATACTCGGgtctacagcagcagcagcagattaTAGCGATGGAGCAAGAGTCTTACAAAGTGGATCCTTTCCGACAGGGATTAACACCTCCACAGATGCCTGGAGATCACATGCACCCATACGGCAGTGAAGGCCTCTTCAATGAGATGTACAGTGATTCTTCCATCAGTAATCTTGGGGACTGTCTCCTGTCTTTCTCTGATGCCGGCGCTGGAGTCCTCAATCCCATTGACCGTCTGTACTCAATGCAAGACTCTTATTTTACTTCATGA

Function

GO:

id name namespace
GO:0061386 closure of optic fissure biological_process
GO:0048752 semicircular canal morphogenesis biological_process
GO:0060117 auditory receptor cell development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0032474 otolith morphogenesis biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09371 LMX1; LIM homeobox transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005088 True 1101 mRNA 0.51 8 15154428 15162185

Neighbor

gene id symbol gene type direction distance location
AMCG00005087 NA coding downstream 35177 15117757 ~ 15119251 (-)
AMCG00005089 NA coding downstream 52569 15093955 ~ 15101859 (-)
AMCG00005100 NA coding downstream 73595 15074672 ~ 15080833 (-)
AMCG00005098 NA coding downstream 97451 15043032 ~ 15056977 (-)
AMCG00005099 LOC103137287 coding downstream 158222 14975251 ~ 14996206 (-)
AMCG00005093 NA coding upstream 3261 15165446 ~ 15182844 (-)
AMCG00005092 olfml2b,LOC101471195,LOC102214710 coding upstream 80376 15242561 ~ 15249295 (-)
AMCG00005108 NA coding upstream 123518 15285703 ~ 15304821 (-)
AMCG00005109 NA coding upstream 149408 15311593 ~ 15333520 (-)
AMCG00005106 NA coding upstream 186450 15348635 ~ 15351466 (-)
G145401 NA non-coding downstream 4836 15145798 ~ 15149592 (-)
G145387 NA non-coding downstream 48978 15105218 ~ 15105450 (-)
G145358 NA non-coding downstream 85315 15068413 ~ 15069113 (-)
G145173 NA non-coding downstream 699345 14426966 ~ 14455083 (-)
G145148 NA non-coding downstream 949939 14204259 ~ 14204489 (-)
G145434 NA non-coding upstream 91328 15253513 ~ 15254888 (-)
G145436 NA non-coding upstream 93704 15255889 ~ 15257664 (-)
G145441 NA non-coding upstream 99162 15261347 ~ 15266948 (-)
G145680 LOC101077364,LOC107383562,LOC104957225 non-coding upstream 1212477 16374662 ~ 16375417 (-)
G145760 NA non-coding upstream 1802018 16964203 ~ 16965074 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 185186 14964414 ~ 14969242 (-)
G145046 NA other downstream 1817682 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 2806100 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 2998050 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 6247834 8872885 ~ 8906594 (-)
AMCG00005111 NA other upstream 340897 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 796519 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 2380961 17543146 ~ 17546332 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 3579699 18741884 ~ 18764298 (-)
AMCG00005214 NA other upstream 3850892 19013077 ~ 19024461 (-)

Expression


Co-expression Network