AMCG00005089


Basic Information

Item Value
gene id AMCG00005089
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15093955 ~ 15101859 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005089
ATGTCTCAGGCCACTCTGCTGGAGAAGGTCACCGAGTGGAGAGTGTTAAAAATtctcacagaaatgtttttaccTCACCTAAACCTTGCTGATTTAGAGGAAGAGTGTTTCTCAAAGGTATTACCAAAGGTTGACAAGGTGTTCAGTGACCTGATGGAAGAGATTGCCAGTCAAATAGGTGGACTGACAAGTCAAAATACAGAGCTGCGTGCATTGCTGAGAAATGCTTTACAGATGATGGTCCAGGTATTGGAGACCCTGTCTGGGTGTGTGCGTCATGTCTGCTCTTTTGAAGAGTCCCTTGCCCTGGACACCATTCGATCTTTACCCTCCTGCATCCTTAAGGTCTTGAAGAACACATTTCAGTACTGCAAGGAGAGCGAGACTGTGTATAATGGGCGGTTATCGCTGGTAGTTGACCTGCTCCAGGCCCTGTTTAAAGAAGCCTACTCACTTCAGAAGGGACTCATGGAGCTTTTGGATAGAATATCCCTGGACAGTTCAGCGACCGAGGAAGACGCGTGTGATATGGTGATAGTGATTCACAGTCTCCTGGATATATGCTCCATAATATCTAACTTGGACATTACTTTGCATGCGAACACATGGAAGTTCATCATCAAACAAAGTATCAAGTACCAGGGGCTGCTGGAGGAACGACTGCGGCACAGTGACATTGTCTGCAGGTTGTGTGACGACCTCCTCGCCTCTTTTCATTCCTGCATGGAGCTTGCAGAGCAGATGAAGCAGTCTGGAGCCCCGgaATCTTCGCAGAGCGTAGAACGCAAATTCTTCCAGAAAACGGCAAAGATGTGTCGTTTTTTTGCAAACACGTTAGTGCACTATATAAAGGAATTCAAACCTTATCTGTCCAAATCTTGCGGTCGACTCCACCATCTGTATCTTCAGATGTACAGcaaGTTTCCCCCCAGCGTTTATGCTCCTGTGATTTCTGATGCACATTGCAATGAGATAAACAAGTTCGGTCCCGAGCTCGTTTTCCCTCAATGTCTCCTGCTTGTCAACATCATGGACAAGCTTCCTTCCCTGCCAGAGGAGGTTCTTAATCTCTGGTTTCAGGGAAGCCAGTTTCACGAGGAGACACCGAGGCTGCCGGTGTTTCAGGCCCTATTCCTGAGTTTCCAGCAGTGCTCCACGGAGCGTGCTGTGCCCATTCTCGTGCCCGGAGTGATGATGAATGGACAGGCACAGAGCCAAGTCACTCTGCACCAGCACGCCTGTGTTCACCTTTCAGCCTGTATCGCTTCTCTTCCGCCTGCCTATTTCCCACAGCTGGAGCACACCCTGCTGACGGCTCTGCTCTGTCCTGATGCTCAGACGGCTCTACTTGCTGCAGATGCCTGGTGCTTTCTAGTTCGCTATGGGACAGCAGAACTCTGTCAGCATCACGTGACCCTCGTATCTCACCTGATCAAGTCTTGCCCTGGAGACTGTTACCAGCTATCCCAGTTGACCTTCTTACTGAGACGAATGTTTGTAATGATGACACCAAATCATCAGATTGAGTTTGTGGAGAAGTTCTCCTCCCGGGAGCCTCAGAATTTGTGCATTTGGCAACATGTTCCTCTGAGAGAGTTTGCCCTGGATGTCAGGAAGCGAGTTGAAGACGACATCGTGAAGTCGGCTATTCCTGTGTGCACCAGCTGGTTAGATGGAGGGTGCAAGCTGGGCCAGCTGGAGAAAGTGAATACGGCCCTCTCTGCCGTGCTGAGCGTGTTTCGCGACTCCGGAGACGCCGTGGAGGAAGCACAGCTGCAGGCCGTCTCCAGACTGCTGGCACAGCTTTGGATGCGTATGTCAGTCAGCCAGGTGCTGTCGCAGCCCGCTGTTCAGTGTACTCTTCGACTGCTCCTCTTGCTTTCAGTCATCTTAGTACAGAGTATGGAGCCTCAAGTGCTTCCTCAGGCCCTGACATGTTTAAGCTCCCTTCTGCCTCTGAAATGTCCTGATGACATTGTGTTGGCTGCACTGGACTTCTTGGCATCTTTGGGGGAAATATTTCTACCTCCAGAAATACAGAGCCAGGTTCTGCCGAAGCTTGCCAGCCTCTTCTCGGCTCTGCTGACTGACGGGTCCTGGCTTCTCCAGCACCACACACTGGAGGCTTTTGCACACTTTGTGGAGGCAACTAACCATGAAGAAGTGATCCCCCAGTGTTTACCAtcagaagaaattaaaactaaagttGTGAATTTTCTCAGCAAGAATGTTCCTCTAGAGGAAAATCGGGAAGCTCGGCTTGAGAGATTAAAATTGCAAAGCTCTGTTATTGAACGACCCAGAGACAGACTGGAAAGTGGTGCCGTGGAAGCAGCTGGTGATTTGCAGCCCTGTCCAAAGCGTGCCCGACAGCAGACCAGTGAGGAGGAACAGTACGAGACGTCTCTGCAAGCGGCAGAAAGTGCTCTGAAGACGCTACAGACCTTAATGGCTCAAACTCCACCTCCACAATGGGTAGCGGCCAGGCTACGGGAGCTGGAGACACAGATAACTCGTATCAATGCGGTTCAACGGACGGGAGCGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005089 True 2547 mRNA 0.50 23 15093955 15101859

Neighbor

gene id symbol gene type direction distance location
AMCG00005100 NA coding downstream 13122 15074672 ~ 15080833 (-)
AMCG00005098 NA coding downstream 36978 15043032 ~ 15056977 (-)
AMCG00005099 LOC103137287 coding downstream 97749 14975251 ~ 14996206 (-)
AMCG00005082 ivns1abpa,ivns1abp,LOC107732388,LOC107553504 coding downstream 241140 14839394 ~ 14852815 (-)
AMCG00005083 NA coding downstream 281686 14805917 ~ 14812269 (-)
AMCG00005087 NA coding upstream 15898 15117757 ~ 15119251 (-)
AMCG00005088 NA coding upstream 52569 15154428 ~ 15162185 (-)
AMCG00005093 NA coding upstream 63587 15165446 ~ 15182844 (-)
AMCG00005092 olfml2b,LOC101471195,LOC102214710 coding upstream 140702 15242561 ~ 15249295 (-)
AMCG00005108 NA coding upstream 183844 15285703 ~ 15304821 (-)
G145358 NA non-coding downstream 24842 15068413 ~ 15069113 (-)
G145173 NA non-coding downstream 638872 14426966 ~ 14455083 (-)
G145148 NA non-coding downstream 889466 14204259 ~ 14204489 (-)
G145146 NA non-coding downstream 910442 14180104 ~ 14183513 (-)
G145138 NA non-coding downstream 931979 14157580 ~ 14161976 (-)
G145387 NA non-coding upstream 3359 15105218 ~ 15105450 (-)
G145401 NA non-coding upstream 43939 15145798 ~ 15149592 (-)
G145434 NA non-coding upstream 151654 15253513 ~ 15254888 (-)
G145436 NA non-coding upstream 154030 15255889 ~ 15257664 (-)
G145441 NA non-coding upstream 159488 15261347 ~ 15266948 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 124713 14964414 ~ 14969242 (-)
G145046 NA other downstream 1757209 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 2745627 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 2937577 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 6187361 8872885 ~ 8906594 (-)
AMCG00005111 NA other upstream 401223 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 856845 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 2441287 17543146 ~ 17546332 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 3640025 18741884 ~ 18764298 (-)
AMCG00005214 NA other upstream 3911218 19013077 ~ 19024461 (-)

Expression


Co-expression Network