AMCG00005093


Basic Information

Item Value
gene id AMCG00005093
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15165446 ~ 15182844 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005093
ATGTGCTGGGGCACCCCACCATGTGGCACCCGCTCTGCTCACCTCCTGGTGACAAACACACTGGAGCTGCTGCTTATGTGCACTGTAAACCACACCTCCATGAACTCTCCTCCATCACAGCCTGCGATGAACTCCATGGTAGGACACCCGTCAGTGATCAGCGCTTCCATCAACCCCTCCAGGTCCCTGCCCTCACCGATGAGCACGCTGGGCTCCCCTATCAATGGATTAGCTTCCCCTTATTCAGTCATAACGTCATCGTTAGGGTCGCCATCGGTCTCACTGCCATCAACACCTGGAATCAACTTTGGCACGTTAAATAGTCCACAGATGAGCTCGATGAACAATGTGAGCAGCACCGAGGATATCAAGCCGCCTCCTGGCCTCGCTGGAATGGGAAATATAAACAGCTACCAGTCGACCAGTCCAGGATCTTTATCCAAACATATATGTGCGATTTGTGGGGATCGATCTTCAGGCAAGCACTATGGTGTGTACAGCTGCGAAGGGTGCAAGGGTTTCTTCAAACGGACCATCCGAAAAGACCTCACCTACACATGTCGGGACAACAAGGAATGTCTCATCGACAAACGGCAGCGTAATCGGTGCCAATACTGCCGCTATCAAAAATGTTTGGCAATGGGAATGAAAAGAGAAGCCGTCCAAGAGGAGAGGCAGCGGGGCAGAGAGAAGAGCGACAATGAAGTTGAGTGCACGAGCAGCTTCAACGAAGACATGCCGGTTGACAAGATCCTGGATGCCGAGCTCGCCGTCGAGCCAAAGACAGAGACCTACATGGACGCCAGTCCGGGAAACTCGTCTAACGATCCGGTTACCAACATCTGCCAAGCAGCGGACAAGCAGCTGTTCACGCTAGTGGAGTGGGCAAAGAGAATCCCGCACTTCTCTGAACTACCGCTCGACGATCAGGTCATTCTGTTGCGAGCAGGCTGGAATGAATTGCTTATTGCCTCCTTTTCACATCGctcagtgactgtgaaagacGGCATCCTCCTTGCAACAGGATTACATGTCCATCGCAGCAGTGCTCACAGTGCGGGGGTGGGATCCATTTTTGATAGAGTCCTAACCGAGTTAGTGTCAAAAATGAAAGACATGCAAATGGACAAAACAGAGCTGGGCTGTCTTCGAGCCATTGTGCTTTTCAATCCAGATGCAAAGGGGTTGTCAAACCCACCCGATGTAGAAGGCCTAAGAGAAAAGGTTTACGCGTCACTTGAGGCATATACCAAACAGAAGTACCCTGAACAGCCTGGCAGgTTTGCCAAACTGTTGCTTCGACTGCCAGCGCTGCGCTCCATCGGGCTGAAATGCTTGGAGCACCTGTTCTTCTTCAAACTGATTGGAGACACCCCCATAGACACCTTTCTCATGGAAATGCTTGAAGCACCGCACCAAATTACATGACATCAAcatgttgtatttgtaaatattgtgAAGCCTATGTAATTGATATAAAGAAAAACTTGATTACGATGTAAActacatattttgtatcatgTCCAAGCACAATTATTAGTGTGGAATTTGTAATGGGGTTtgaagtacaaaaatatatagaaatgtaaaaaaaattgtaaatagACAATTCCTGTTACACTTACCAGTTCAATAGTTGCCTAATCCAatataaaatctaattttattaaataataaactataaaCAGAAACCAAGTCACCAGCTGTGAATTTCTAAAATACACATTAGAATTTAGTaaacatctgaaaaaaatactattttcttctctttttttgcaTTCTGAGGAGATTTTGTACAGTCATAAATGTGAAAgatttttatgatttatgttttttgttagcaCTTCAAAGATTAACCACTAGGTGGCAGGCTAGGAAAAGCCTAAATTGCATTCGGTGCTgtattcaaaaatgtttttaaatgccagATAAGTGGAGCATTAAGCACTATGTGTATGAAAAACTTTAATCATCAGTTGCAATGTATGTAGCTTATAATATTTTGGTCACTGTGTTCTTTTACCACCATGAATTTAAGACTATTTTAACCCCCGGGGCTGTTAACaatctaaaatacaaacaaaaaacacttctgtAATTCAATTCTTACTACTTACTACCTCAGTTCCTCAGGACatctgaaattatttataatatagcACTTTTCTCACCTATGTTTGACTTAGGCAATGTCTGTAATCAACATTACAGACACAATGGATCTAATTAACATGTGACACTTAG

Function

GO: NA

KEGG:

id description
K08524 RXRA, NR2B1; retinoid X receptor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005093 True 2244 mRNA 0.44 10 15165446 15182844

Neighbor

gene id symbol gene type direction distance location
AMCG00005088 NA coding downstream 3261 15154428 ~ 15162185 (-)
AMCG00005087 NA coding downstream 46195 15117757 ~ 15119251 (-)
AMCG00005089 NA coding downstream 63587 15093955 ~ 15101859 (-)
AMCG00005100 NA coding downstream 84613 15074672 ~ 15080833 (-)
AMCG00005098 NA coding downstream 108469 15043032 ~ 15056977 (-)
AMCG00005092 olfml2b,LOC101471195,LOC102214710 coding upstream 59717 15242561 ~ 15249295 (-)
AMCG00005108 NA coding upstream 102859 15285703 ~ 15304821 (-)
AMCG00005109 NA coding upstream 128749 15311593 ~ 15333520 (-)
AMCG00005106 NA coding upstream 165791 15348635 ~ 15351466 (-)
AMCG00005107 NA coding upstream 177129 15359973 ~ 15369988 (-)
G145401 NA non-coding downstream 15854 15145798 ~ 15149592 (-)
G145387 NA non-coding downstream 59996 15105218 ~ 15105450 (-)
G145358 NA non-coding downstream 96333 15068413 ~ 15069113 (-)
G145173 NA non-coding downstream 710363 14426966 ~ 14455083 (-)
G145148 NA non-coding downstream 960957 14204259 ~ 14204489 (-)
G145434 NA non-coding upstream 70669 15253513 ~ 15254888 (-)
G145436 NA non-coding upstream 73045 15255889 ~ 15257664 (-)
G145441 NA non-coding upstream 78503 15261347 ~ 15266948 (-)
G145680 LOC101077364,LOC107383562,LOC104957225 non-coding upstream 1191818 16374662 ~ 16375417 (-)
G145760 NA non-coding upstream 1781359 16964203 ~ 16965074 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 196204 14964414 ~ 14969242 (-)
G145046 NA other downstream 1828700 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 2817118 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 3009068 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 6258852 8872885 ~ 8906594 (-)
AMCG00005111 NA other upstream 320238 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 775860 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 2360302 17543146 ~ 17546332 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 3559040 18741884 ~ 18764298 (-)
AMCG00005214 NA other upstream 3830233 19013077 ~ 19024461 (-)

Expression


Co-expression Network