AMCG00005098


Basic Information

Item Value
gene id AMCG00005098
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15043032 ~ 15056977 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005098
ATTGCAACTCAATGGGGCTCAGCAGCGGTGCGGGTTGACTGTTTCTTTTTAGGTTTTGCGAGTTACAGGTCTTGTATACAACAATCAGTGAAAATGGGAAGAAGTTACATTGTGGAAGACAATGTAGAAAAGTACATCCTAAACCTGAACACCATGGAGAGATCCTATATAACTGGACTTTTAATTGGACAGTGTTCCTCCCAGAGAGATTTTGTGGTGTGGGCCGTTCAGTCACCCGAAAAGGAAGCACAATCCCCACAGCCCCTCAGGAAGAGTGCTCTGGGGCCATTTGAGGACATTGATGAAGAGTGGGTTAATGAACATGCCCGCCAGGTGTCCAGAATGTTACCCGGCGGACTGGCAGTTTTGGGGGTGTTCCTAATCACCCCGCCTGAACAGTCCAAAGAAGCTCAGACTATGCTGCGCAGGTTGGTGTTTGCAGTGGAGAAGTCCATAATGAGGGGAAAGTTGTGGACACTCACGGATGACGATGTCTCCGAAAGAGTGACCCTTCACATCTGCTCAAAGACAAAGAAAGTGTTGTGTCGGACCTTTGATATGCGAGATCCTAAGAGCTCTGCTAAACCAGCAGATTGGAAGTACCAGTCCGGAGTGTCGAGCTCGTGGTCGGTCCTACAGTGCAATGTTGAGATCAACCTGCAGGTCCCGTTGTCAGAAACATCCTCTGACAAAGACCTTGACAAATGCATTAAGACTGAGCTTCAGAAGTGGGCAAACCTCATTGAAGGCAGCGTTTGTCTGATCAATGGCCAAGTCAGATCTGATGATAAGGATTTCATGGACGGACAGaggAAGAACACAAGAGGTTCTGGTTCACAGCAGACTTTCATGGTCCAGCTTTTAACGCCATCACAAGGTCACTTTTCCGTTGAGAGGACCACTGCTTCAGTACAATTCTGCAGTGCCTCGATTTCATTGCAGGGGGTTGCTTTGAAGAGAGATGTACTGAACACAGTTTCTGTCCGCACAGAGATGCTATTTGAAGATTTTCTGCTGAGTGAAGGAGATGATATGAATTCAGCGGCTGGTAAGGGGCAGCATATGTTGCCCCGGAGAGTGTTTGCCCCAGTGCTGGGCTGTGCGCTTGGGGTGTGTGACTACATGTTCCCAGATGAGGCAGTGGCAGACCTGCAGGAACGCTTCAGAGAAATGTTGGACTGCGACATCAACGAAGAGCACATTGATATGACCCAGGAAGTGTTTGGAGGTGTGGTGATGGCCGCTGGAGTTGCCATCGTTGCTACAGCTCTTTCTCTTCTCTATTTTAGCGATTGAGCTCTCTAATAAATCTTGTAGACATCTGAGAGACATTCAAGCCTGGTGAAGACGAGCACGGTCTGAAAGCCTGAGAAcactgtgttgctgttgtttgggttttttcaAGAGGGATGGTGAAATGTCGGATCaaatttcatttcactttttttttttgtctaaaaTATCATGTTATGTCTCCAGTGACAGTTTGATAACCAGATCTGTCTGAATGGATGACAAAGGATGAATGCTTCCTTTTCTAATTATGTTGTGAGGATTATGATGCTTCAAAGCCCACAGCCCTGTACTTGTCCAAGGTGTGGTTTCATATGACTCTTGGAAAATAGTTTTTGTCTGCTTCCTCCAAACTGACCTATTATAAGTGCCCAATGTAGCTTGCTATGACTCAGCATTGCAGATAGGCTAAGCCAATATCTGAACTGAATGTTAAACCAAAAGACCATAAACTTAACACATTTACAGTTGAGCCATCTAAGATCCATACAACTGTTATGTCTGTaaattaattatgatttaatagACTGAAAGAAATATGTATAAGAGCTTTCTATCCATAAATGAAATAGAACCTCATTCAATGCTATTTGAAATGATTCCACACGACACGGCCACAAAATCCCCCAAGCAACGCTATTCCTGGAGATCTCTGTCAGAACAAGCTCAAAAGCAGGCCAAGCAAAGCACGTTGCACGAAACTGATGTGGCCCTTAAGATACTGCGAAATTATTAGGAAATCCATCAAAGATAATTTGATAGTACAGTAAATGGtgtgattttattaaattaagatttcCTTGAAAAAAGTATGTTCATGTCAATGTTGAGTCACTTCTCTGGCCAACATTTTAGATACTTTTATCCCATTACTTCTgagagtaaaaaaacaaataaaagatgtGTGTTATAGTTCGTTATTAATCTATGGAATACATGATCTCaattaacacatatatatttttaatttggccTTATTGTttgaacatatatattattgtttttctacaCAAGGCTTGAAatgatttcacattttgtaaatgtgttctctaaatcaaagtttaaaaaaggCTCTGCAGCTGGGTGATctgttatgaatacatttgcgTTTCCAGTGAGTTACTTTTCATCCTGCTAAAACTGCTCCATCTTGAATACTGGTTGTTCTTTACTTTAGATGTGTAAAAATATGCCATTTCAGTTTCACATGTGattctgtgtttcttttgctttttcagGTGTTTCCATTATATGTTATGATGTTATAACTTTATTAAAAGTTAAGAATGTAATCACCTTTCAATCCACAGAGGTTCAGAGTAGTTTCACTATAGATAAAGATAATTAACAGACTGAAGATAATTTCTTTCaggcaaaacattttcatttagcaACTGCAAATTATACTATGCTTTTAAGGTTATAACACGCTATGCTGGAAAGATTTGGGGTAATTATATATTCTCAGATTCACCCAAATGACTTATGgtattactgtacattttaacaagaattgtatttatttttaacaaatgctGCTTCATTCTGCATTTGTAGAAATGCATTGAGCTAAATATGTATTGAGATTTCTACTGTTGTTAGGTTTCATcccatgtatttttgtttttatttgcatacagTGTATAAAGCTATTCAAAATATCGAATTCTAACATGATCTATGACCTATGCTGTTTAGGAGCTTGTTGGAATTTGTCATTTGTTGGTAATACCTTATCTGTTGAAAAGATGAGATGTGGAAATTAACTCAAAGattagatgatgatgataacatTTCAGATCTGACAAGAATTTGGTTAAAAAACACTGTGGCAACAATTATGAAAACACTTCAGTAATGGTAGTTCACAATGTATCTTAATTAATGTACCTCACTTGTGGTTTTTCCCTTCCCAACACATCCAATTTAACTTCCCAGGTAAGGGTTTTCTTCAAAGCTTTTCGTGTGACTTGGAGAGATACTTAAGTATTGCCTTATAGCTGTTGCTAGCAAAACATTTGCCACTGCAATTGCTGACACCTAGTTACTTTTGTAATGGTGACTGGCCTGGAATACCTTGCAGGGACTGTTATCTCTAGATTTTAAATATGAGGAATCCTGCAAACGTCATGTGATAATAagtttgctttaattaaataactttttgtccccttacaagttttttttttttctctcagatattttctgttaaaatggtttaatgccaagacatttttaaatcaatttatctTTGCTTGACAGTTGCAGTATTAAGGGTTGTCAAGGTAAAGTTTTTTGgtaataaagacaaataaacattaattctAAAACTATGCAAAagatatttctttttttatta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005098 True 3652 mRNA 0.38 13 15043032 15056977

Neighbor

gene id symbol gene type direction distance location
AMCG00005099 LOC103137287 coding downstream 46826 14975251 ~ 14996206 (-)
AMCG00005082 ivns1abpa,ivns1abp,LOC107732388,LOC107553504 coding downstream 190217 14839394 ~ 14852815 (-)
AMCG00005083 NA coding downstream 230763 14805917 ~ 14812269 (-)
AMCG00005081 NA coding downstream 258190 14771562 ~ 14784842 (-)
AMCG00005076 NA coding downstream 301102 14735839 ~ 14741930 (-)
AMCG00005100 NA coding upstream 17695 15074672 ~ 15080833 (-)
AMCG00005089 NA coding upstream 36978 15093955 ~ 15101859 (-)
AMCG00005087 NA coding upstream 60780 15117757 ~ 15119251 (-)
AMCG00005088 NA coding upstream 97451 15154428 ~ 15162185 (-)
AMCG00005093 NA coding upstream 108469 15165446 ~ 15182844 (-)
G145173 NA non-coding downstream 587949 14426966 ~ 14455083 (-)
G145148 NA non-coding downstream 838543 14204259 ~ 14204489 (-)
G145146 NA non-coding downstream 859519 14180104 ~ 14183513 (-)
G145138 NA non-coding downstream 881056 14157580 ~ 14161976 (-)
G145131 NA non-coding downstream 979909 14062865 ~ 14063123 (-)
G145358 NA non-coding upstream 11436 15068413 ~ 15069113 (-)
G145387 NA non-coding upstream 48241 15105218 ~ 15105450 (-)
G145401 NA non-coding upstream 88821 15145798 ~ 15149592 (-)
G145434 NA non-coding upstream 196536 15253513 ~ 15254888 (-)
G145436 NA non-coding upstream 198912 15255889 ~ 15257664 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 73790 14964414 ~ 14969242 (-)
G145046 NA other downstream 1706286 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 2694704 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 2886654 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 6136438 8872885 ~ 8906594 (-)
AMCG00005111 NA other upstream 446105 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 901727 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 2486169 17543146 ~ 17546332 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 3684907 18741884 ~ 18764298 (-)
AMCG00005214 NA other upstream 3956100 19013077 ~ 19024461 (-)

Expression


Co-expression Network