AMCG00005105 (LOC102220226,LOC108442892)


Basic Information

Item Value
gene id AMCG00005105
gene name LOC102220226,LOC108442892
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15379599 ~ 15384811 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005105
ATGCAGGGGCAGCCGCGCTGCACCTCTCAGACCCGGGTCGGGTGTAACAGTGCGCGGTGGAGATATGCCCCTGATGAGAAGGAGAATGAGCGCCAGTTCCTGCTGGACTTACAGTTCATCTGTGACAGGCTGCAGAAACTCCGCATTAGTGATGTGGTCCTGGCTAAGgCCATAAATACCCCTGCGCATCTCCTGGACCCCAGTCAGCTGATAGGGATGAACTCTGTCCCTGACCTTACCCCCTCTCTTGCCAACCTTGGCAAACAGCCCATGGGGGGACATGGCCCAGGCTCTTTGCCCCCCCAGCCCTCAGCAGAAGGTGCCCGGTGCTCCCGGCAGGGCGAGAGGAAGGAGCCGCGAATCATCAACTTGTCATTCACGTATGAGATTCAGCTCAACAAGGCCGAGAAGGCCTGGAAGCCTACAATTAAGCAGGCTCCCACAGTGGGTGATGACCCCGAGGTCATTAAGACCCAGGAGCTGTTCCGCAGGGTGAACGGTATCCTGAACAAGCTCACCCCGCAGATGTTCCAGCCGTTGATGTGTCAAGTGAATGAGCTGACCATCGACACAGAGCAGCGACTCCAGGGTGTTGTGGAGCTCATCTTCGAGAAGGCCATCTCCGAACCCAACTTCTCCGCCTCATACGCCAATATGTGCCAGTGCCTTCTGAGGCTCAAAGTCCCGGCTGCTGACAAGCCGGGAGAGACAGTGCCTTTCCGCACTCTGCTTTTGAACCTCTGCCAGATGGAGTTTGAGACGGAGGAGGATGGAGACGAGGGCGAGGAGCAGCAGCGTCTACGTGCCGAGCTGCAGGAGGCCAAGCGCAAGGCCCAGCGGCGCTTGCTAGGCAACATCAGGTTCATTGGGGAGCTGTTCAAGGTGAAGATGCTGGTGAAGAAAACCATGCACAATTGCATCGTCAAGCTGTTGAAGAACCACGAAGAGTCCCTAGAGTGCCTGTGCCGACTCCTCTCCACTATCGGCAAAGACCTGGACTTGGAGACCGTCAAGCCCCGCATGGACCAGTACTTCAGCCAGATGGAGCAGATCATCAAAGAGAGGAAGACCTCCCCTCGAATCTGCTTCTTGCTGCAGGACGTCTTGGACCTGAGAAGAGATAACTGGGTGCCCCGGAGGGGTGACCAGGGTCCTAAGACAATCGACCAGGTCCACAAGGAAGCAGAGCTGGAGGCGCACCATGAGCAGATCAAGGTGCAGCAGCAGCTCATGAGCAAGAAGGACAACCGACGTGATGCGAACTTCAGCGAAAGTGTCCTGCCACGCGTCGGTCGggccagagcagagcaggcCAGGAAGAGAGGGACTTTTGCGAAAGCACTAGAAATAGAAGCACCAGTCCTTCTCTGGCGAAGATGAAAGCATCAACATACGATCATTAAATTTCtctgtttaatttacaaattataatgatgatgtttTTCTGTTCAAACTAA
>TU183002
AGCCCCGCATGGACCAGTACTTCAGCCAGATGGAGCAGATCATCAAAGAGAGGAAGACCTCCCCTCGAATCTGCTTCTTGCTGCAGGACGTCTTGGACCTGAGAAGAGATAACTGGGTGCCCCGGAGGGGTGACCAGGGTCCTAAGACAATCGACCAGGTCCACAAGGAAGCAGAGCTGGAGGCGCACCATGAGCAGATCAAGGTGCAGCAGCAGCTCATGAGCAAGAAGGACAACCGACGTGATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005105 True 1457 mRNA 0.55 8 15379599 15384811
TU183002 False 246 TUCP 0.57 2 15384243 15384612

Neighbor

gene id symbol gene type direction distance location
AMCG00005102 NA coding upstream 32221 15337268 ~ 15347378 (+)
AMCG00005103 NA coding upstream 69722 15309090 ~ 15309877 (+)
AMCG00005104 NA coding upstream 95149 15258397 ~ 15284450 (+)
AMCG00005090 NA coding upstream 137400 15200846 ~ 15242199 (+)
AMCG00005091 NA coding upstream 179469 15197034 ~ 15200130 (+)
AMCG00005110 plppr5,LOC107739033,LOC107657749,LOC107677304,LOC107712819,LOC106578506 coding downstream 80272 15465083 ~ 15492249 (+)
AMCG00005119 NA coding downstream 233800 15618611 ~ 15627259 (+)
AMCG00005118 dpyd,dpydb,LOC106578501 coding downstream 257858 15642669 ~ 15662088 (+)
AMCG00005117 dpyd,LOC107590279,LOC107677268,LOC106568897,LOC106578501 coding downstream 277283 15662094 ~ 15680728 (+)
AMCG00005116 NA coding downstream 368371 15753182 ~ 15755418 (+)
G145435 NA non-coding upstream 121936 15255889 ~ 15257663 (+)
G145418 LOC106560501 non-coding upstream 135353 15242385 ~ 15244246 (+)
G145398 NA non-coding upstream 226860 15142484 ~ 15152739 (+)
G145379 NA non-coding upstream 251028 15126586 ~ 15128571 (+)
G145369 NA non-coding upstream 282587 15094969 ~ 15097012 (+)
G145577 NA non-coding downstream 568804 15953615 ~ 15954678 (+)
G145593 NA non-coding downstream 651801 16036612 ~ 16047194 (+)
G145630 NA non-coding downstream 844477 16229288 ~ 16231853 (+)
G145731 NA non-coding downstream 1529204 16914015 ~ 16914225 (+)
G145744 NA non-coding downstream 1552016 16936827 ~ 16937075 (+)
AMCG00005060 LOC106599426 other upstream 1191270 14155155 ~ 14188329 (+)
G144940 NA other upstream 2598429 12780580 ~ 12781170 (+)
G144677 NA other upstream 3716231 11662681 ~ 11663368 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 5364175 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 5628822 9700167 ~ 9750777 (+)
G145932 NA other downstream 2380446 17765257 ~ 17771525 (+)
AMCG00005199 wdr78 other downstream 3430218 18815029 ~ 18821642 (+)
AMCG00005232 dock7 other downstream 4090328 19475139 ~ 19530453 (+)
G146305 NA other downstream 4194762 19579573 ~ 19579807 (+)
G146519 NA other downstream 4797543 20182354 ~ 20184643 (+)

Expression


Co-expression Network