AMCG00005106


Basic Information

Item Value
gene id AMCG00005106
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15348635 ~ 15351466 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005106
agaGGCACGACTGGGGTGAGAAGGATTGCTGGAAATGAACACAGTGCAAGCTGCAGCAACACTCGAAATCTGAAACGAAACGAACCAAAATACTTCCCTGAAGCAGTAACCATGGAGACAAGCCAGCTACCAGAATCGGCCTCTGTAGTTGACTGTAAAATGGATTCTGTGGAAACAGAAATGGCTGAGGATAAATGCGTGGATGTGGAAGCCGAACAAGTTCATTTCCATGCTGATTTCTCCGAGTCCATAGAAACAAAGGAAACAGTCGATATTTGTGCTGACCTGCCACAAACTCCCATCCCATTGGATGAAAACGAGAGCTTCGAGGGAAATGGAAGTTTAACAGAAATCACGTGCAAAGGAGACGATTTGATCTTACGCTCGGGATCAGTGGAGCTTAATCGGACAGAGTCGGTGACCTCTTCGATATCCGACTCACCTTCCAGTGCAGGAAGTGTctatgaaaatgaattgatcGTCAAAAGAAAAGAATTGGAGGTCCAGATTGAACTGGACAATGCTGTTACCACAGATGAGTCTGCAATAAGTCCTGTTACAGAAATAATCGACCACGAGGTACAAGACAGTGTTCTGGAAAGCGGTGTACTCGAAGAGCCTGAGACCTCTGTCTTAGAGCAGTGTATAAAAGAGGAAACCGCGTCTGATGCTTCAACAGAATCCTGTCATGAACTTGACAACAATGAACTGATTGACAGCCTTCAGGATGAAATAGCGGCCATTTCCTCAGACAGTGAAATTGATGAGAAATGGAGAGccatattttcttcttctgttaaTAAGGAAGGTGAAGATCTTTTTCTGGACACCAATACTGAGACTGACACTCAACCATTTGCTGCAGAAGATGACAGAGATGTCCTCAGCCCAGATGAAATTAATCCAGAGATCGAGGGAGAAGTCTCTGACATTTTAGATGTTAAGGAACAACCTGAAGAACTCACAGAACATGATTTTCAAGCACAGGAGTATTCATACACTTCTCCTCCTCTGCTTCACGGCTTATCCAAAATATCTGAAGATGACGAAGAAGTTATTCAGAGtgtaaaacaaaccacacaccTATCACATTCTGTTCTGGCAGATCCCACGAAGAAGATTCCAGAGGActattgtgtcattcaagagacaaaaaatgaaaatgtcagttCAGAGCACGTAGATTTCAGAGTTGCCCGGAAACAGTGGTTGTTGATGGAAAAGCAGACCAAATGCCAAGGCTGCCAACCTACAGTGAAGCCAAACGCATGCCAGGGTGGCCACAGCTTCATGTATACTCCAGTCAGAAATATCGACAGGCCTAAAAAAGATCCTGAGGCCGACAGTTTAGGAATAAATGAATATCCGAATACTCTATTCAGTCCTTGCTCTGAAGACTCTGGTTTGGATGACTCAAGCTATAGATCTCCTTATGATGACCCCAGTATAACATGTGATTTCAAAGACCTGGCTGACACTCCGTACAGCCCCAGACTCATTTCTCCAATGTCTCCAGAGACTCCCATCGAAAAGGAAATCCGCTTGGCtttggagagagaagagagtcTTCGCCGTGAAAGGGGGATTGCAAAATCAGTCCATGAAAGCGAAAGTGTTGAAACCAAAATTAAATCTGCTAATATTCTGCCGGGGAAGTTTGAGAGAGGATTGTGCCAggaagtgggggaaaaaagaaagatgtttgAATCTCAAGAAGATGTGTGCAGCGTACAGAGGTCCTCCAACACCAAGCCACCATCTTTTACTATAACCTCAACCTCCTCCCCAGTCAAAGGTCCTTTATATCATGAGATGGCAGCGAATAATGTAATTATCCTCGAACCCGACACATATTTCTCTGCTCCGAGACAATGTGCAAAAGATGCCATCCTTTCTCCTGTCAATAAGAAATCAAATGAGTGGCCCTCCGAAACCACCAATGTTATCATACTAGAGACCTCCAACCTGATCATACGGAGCGCGTCCGAGTTTTGTCTGAACTCTGCCTCCGAGCAAGCTCAAGAGAACTCCTTCCAGAATAATCCATTCTTCAAACTGCGTTCCAGGAGCACCCAATCTCTTGTAGACCAGGAAATTAAAGTAGCAaaacagagagaagaagaaCTACAGAGGCAAAGGGCAAGTCTGTATGCCAAGGAGAAGTATGATACTGTCTTGGTATCTCCAAATCTACTTGACAGTTTGACCTTTGACAAATCAGATTTACCAGTGAGATGTAAGTCCTCTCCTTCATCACCAATGAAGACTGCATACAAAATGGACCGCTCAACACTTTCTTGTGAGCATAAGtttccAGACTCTTTCAGTGGAGCCCGTCGTAAAAGTGCCATGGCTCTTCGCTGGGAGGCAGGGATGTTTGCCAATCATAAAGAAGAATGA

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005106 True 2400 mRNA 0.44 3 15348635 15351466

Neighbor

gene id symbol gene type direction distance location
AMCG00005109 NA coding downstream 15115 15311593 ~ 15333520 (-)
AMCG00005108 NA coding downstream 43814 15285703 ~ 15304821 (-)
AMCG00005092 olfml2b,LOC101471195,LOC102214710 coding downstream 99340 15242561 ~ 15249295 (-)
AMCG00005093 NA coding downstream 165791 15165446 ~ 15182844 (-)
AMCG00005088 NA coding downstream 186450 15154428 ~ 15162185 (-)
AMCG00005107 NA coding upstream 8507 15359973 ~ 15369988 (-)
AMCG00005101 NA coding upstream 67109 15418575 ~ 15436970 (-)
AMCG00005112 ptbp2,ptbp2b,LOC107677766,LOC107718150,LOC107570490 coding upstream 441148 15792614 ~ 15814059 (-)
AMCG00005115 NA coding upstream 596062 15947528 ~ 15952291 (-)
AMCG00005113 hccs,LOC106942126,LOC106904910,LOC106519007 coding upstream 602998 15954464 ~ 15956072 (-)
G145441 NA non-coding downstream 81687 15261347 ~ 15266948 (-)
G145436 NA non-coding downstream 90971 15255889 ~ 15257664 (-)
G145434 NA non-coding downstream 93747 15253513 ~ 15254888 (-)
G145401 NA non-coding downstream 199043 15145798 ~ 15149592 (-)
G145387 NA non-coding downstream 243185 15105218 ~ 15105450 (-)
G145680 LOC101077364,LOC107383562,LOC104957225 non-coding upstream 1023196 16374662 ~ 16375417 (-)
G145760 NA non-coding upstream 1612737 16964203 ~ 16965074 (-)
G145995 NA non-coding upstream 2673299 18024765 ~ 18025674 (-)
G146022 NA non-coding upstream 2946381 18297847 ~ 18298103 (-)
G146023 NA non-coding upstream 3000401 18351867 ~ 18352132 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 379393 14964414 ~ 14969242 (-)
G145046 NA other downstream 2011889 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 3000307 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 3192257 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 6442041 8872885 ~ 8906594 (-)
AMCG00005111 NA other upstream 151616 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 607238 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 2191680 17543146 ~ 17546332 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 3390418 18741884 ~ 18764298 (-)
AMCG00005214 NA other upstream 3661611 19013077 ~ 19024461 (-)

Expression


Co-expression Network