AMCG00005108


Basic Information

Item Value
gene id AMCG00005108
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15285703 ~ 15304821 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005108
GTGGAATTCAATCCAATTTTTTAGCGCAGTGCTAGACAGTATACAATATGAGTTTAGTAGCTGCTGTTCAGTTAAGACCAATccaataataatagtgaaaacAGCAAGattaatttagaataaaatCACAGTTGTggaaaatatgatttgtttttgacgGAGATGACCAAGGTTCCTGGCTCCTGCAAAATAGTGATTGCACAAGTCGATTGTCAGAATGAATAATGATAAAGTCAGCTGAGTGTAGAGATCATAATATCGATATCCTCATTTATATAGGAGAAGACAGTGCTTTAAAAACGTCATCGACTTCTTACGGGCTGAGTCTCTGCTATATGATCATCAACACCAGGGCTGAACAACAGGGTTCATTCACCGGACTGGACAGCAAGCGGAGCACTTTTGTGTTGGGAGCATCCTTGTGGTTTGCTTGTGCAAGATGGATAGTTGGAGATTTGTCTTCTTGTTTCTTCTCTGGGAAAGTTCCCTACTGGGTGTCATGGGTTACCCAGGGGGAAATGTTGAAAGTTCCTGCAGTAATCTGATGCCTAGCCATGGTGCTAATGCCCAGACTTCAAATGCTCCCTACACTGTAGTGGCAAATCCGACAACCTTCAAGGCAGGAGATACAATCACAGTGACTCTCCGAGCTACGTCTGGTTCATTCAAAGGATTCTTGTTAGAGGCTTGGGAAGTTGGAGGAAGCACACCTGTCGGTAGTTTCACTAGTCTAGCCTCGGTTTCTCAGGGTCTGACCTGCAGTGGGATCGCAAATTCGGCTGTTAGTCACACTTCCAGCTCTAGTAAAACGTCGATCCAAGCAACGTGGAAGGCACCATCATCTGGAAGTTTGAAAGACATTCAGTTCAGtgcaaCATTTGTTCAAAGCACTAAAACATTCTGGGTTGCTGTTAAAAGTGGAACAGTTACATACAGCGGTACCTCTGTCCCTAATCCTtTACAGATTTCTAATGATGCTTGCGGGATCAATAAAACCTGTTTCAGCAGTCCCAGTGGTTGTAATCCACAAATCACCAATGGCTGCTACTTCATGTCTGCTGTCGCCTTGTCTTCCTCAATTCAGTTTGAAATTTCTGCTCCCTCAAATGGCTACATAGCAATTGGATTTTCAGATGATACACAGATGGGAAGTGATGATGTCTATATCTGTGGTAAGGATGCAAATGGCAACATTCAAGTTCAACATGCCTTTTCTACAGGAACGACAACGCCAACTACATTACCTCTGGGAAATGTTACTGTGATAACGTCTTCTATCAGCAATGGTATCATCAGTTGCTCGTTCATATCAAGAAACAGCATTTCAACACAGAGTCGTGCTGTGCCAAGTCTTCTGTATTACATCATGTTAGGCTCTGGACCTTCTGCTAATGGTCAGATACAAATGCATACTCAAACCCCTTTTGTCAGTGCCCAGAAAATTGATTTGTCAGCCATCCAAGCAGTAGGTGGGAATGCAGGAGTGTCGGATATGATTAAAGCCCACGGAGCACTAATGCTAATAGCCTGGATGACCACAGGAAGTATTGGCATGATCATGGCCAGGTATTTTAAGAAAATTGCACATGGGCAAGCAGTCTGTGGAAAAGATATCTGGTTTCTGGCTCATGTATTTCTGATGGTATTGACGGTTGTCGCAACTGGCATTGCATTTATCATCATTTTTGTAGAGGCAATGGACTGGAGTGtggcTGCAATATTCACTGGTCTACAGCGCATTGACAGCTCCTCAAATCAGTGGCTGGCAAAAGTAATGGGAGGTTTTGTTGGATGGGAATTCCTGTTTTACTTGCTAcaggattttaatttgtttttgaagagaaAAGgacgAACAGAAACGGTCATGGGCACGGTGAATTTGGAGATCATATTTCTGACTCTGTATTTCATCGGGAACTTAACATTTTTGATTGCTCTACTTGTTGGAATTGGTATGTCATGAAGAATCAAGCACCGGAAATACCAGTTTTGTACCATGAAGTGTCAATTTTTCTCACTTAAACCAATGAATAATTAAGCAATATATGAAATAACATATAAAGTTCCTataataagaatatatttagaatacttacatttgtattatgatttcTGGGAAATAACCTGGGAGGAATCTGATCAGTAAGTTGCACTACTACTAAGTTTTCCTGTCCTCCatactgttttttaaaaaaaaatgtgattaatcaATCTCATTTAGAGATTGCTTATCCGAATTGCATCATCCATAGATGTCAGTGAAAGAATGCATATTTCTTGAGATACatagatttgtatatatatatatatatata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005108 True 2315 mRNA 0.40 15 15285703 15304821

Neighbor

gene id symbol gene type direction distance location
AMCG00005092 olfml2b,LOC101471195,LOC102214710 coding downstream 36408 15242561 ~ 15249295 (-)
AMCG00005093 NA coding downstream 102859 15165446 ~ 15182844 (-)
AMCG00005088 NA coding downstream 123518 15154428 ~ 15162185 (-)
AMCG00005087 NA coding downstream 166452 15117757 ~ 15119251 (-)
AMCG00005089 NA coding downstream 183844 15093955 ~ 15101859 (-)
AMCG00005109 NA coding upstream 6772 15311593 ~ 15333520 (-)
AMCG00005106 NA coding upstream 43814 15348635 ~ 15351466 (-)
AMCG00005107 NA coding upstream 55152 15359973 ~ 15369988 (-)
AMCG00005101 NA coding upstream 113754 15418575 ~ 15436970 (-)
AMCG00005112 ptbp2,ptbp2b,LOC107677766,LOC107718150,LOC107570490 coding upstream 487793 15792614 ~ 15814059 (-)
G145441 NA non-coding downstream 18755 15261347 ~ 15266948 (-)
G145436 NA non-coding downstream 28039 15255889 ~ 15257664 (-)
G145434 NA non-coding downstream 30815 15253513 ~ 15254888 (-)
G145401 NA non-coding downstream 136111 15145798 ~ 15149592 (-)
G145387 NA non-coding downstream 180253 15105218 ~ 15105450 (-)
G145680 LOC101077364,LOC107383562,LOC104957225 non-coding upstream 1069841 16374662 ~ 16375417 (-)
G145760 NA non-coding upstream 1659382 16964203 ~ 16965074 (-)
G145995 NA non-coding upstream 2719944 18024765 ~ 18025674 (-)
G146022 NA non-coding upstream 2993026 18297847 ~ 18298103 (-)
G146023 NA non-coding upstream 3047046 18351867 ~ 18352132 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 316461 14964414 ~ 14969242 (-)
G145046 NA other downstream 1948957 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 2937375 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 3129325 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 6379109 8872885 ~ 8906594 (-)
AMCG00005111 NA other upstream 198261 15503082 ~ 15535145 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 653883 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 2238325 17543146 ~ 17546332 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 3437063 18741884 ~ 18764298 (-)
AMCG00005214 NA other upstream 3708256 19013077 ~ 19024461 (-)

Expression


Co-expression Network