AMCG00005111


Basic Information

Item Value
gene id AMCG00005111
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15503082 ~ 15535145 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005111
CGGcgatcctgcagatctgcgcagagctgcggacatctgcgctgcacGACCGTGACCCGCGTTTCTTTCCTGTCTGTGGGATTTCCGGTGTTGCGCAGTGCGAGAGGTAGCCGAAATAAAGAAAGTCTGGGCGCAGAGAGAAGTTGGTGCTGTCTGGTGAAGTCCGGACCTCGCTGGCATGGACAGCCATCCCCTCCCAGAGCCCGGCGTCTGCGCCGCCCCGGCCCCCGCCGCCGCAGACCTGGCCGGGCAGATGCTGGAGCTGGATGAGGATGACGACTTGGAAGTTTTCAGTAAGGATGCCACACTGACTGATTGCAGTTCCTTCAATACCTCTATGCCAACATCCCCAGCATCCATGATTAATCAGTATAAATTTGAAGAGGAGCCAGATGCCAAAGACATATTCATCACAGTGGATAATCCCGAGAGTCATGTGACCGCCATAGAGACCTTTATTACATACAGGGTTTCAACTAAGaccACTCGCAGTGAATTTGACTCCTGTGAATATGAAGTCCGCAGGCGTTATCAGGATTTCCTTTGGTTAAAAGGCAAACTTGAGGAGGCAAATCCTACTTTAATCATCCATGAGCTTACTTCCCACAAGAAGCAGGGTCCTGGCTTCCTGAGCCGGATGGGGGACACCGTACGGGCAGTCGCGGCCTCCGTGCGCGGCGTCAAGAGCCGACCAGAGGAGTTCGACACGCTCAATGACTACGTAGAAGTTTTCGGCCAAAAAATGTCTGTGATGGATAAAATTGCACAGAGAGTTGTCAAAGAACAAAAAGAGCATCTGGAAGAGATGAAGGAGTATGGCCCAATTTACACTCTTTGGTCTGGGTCTGAAGAAGAGCTCGGGGAACCTCTGACAGCAGTTGCTAGCTGCGTTGACAAGTGCTGCAGAGAGGCTGAGGAGCACGTGAACTCGCTGTCTGAAAACCTGGTTCCCGTGCTCCACGAGTACGTTCTTTGTGCTGAGACTCTAAAGGCGGTACTGAGAAGACGGGACAACATCCAAGCAGAATGCGAAGCTAAAAACGACGCTCTGGCAAGTAAGAGAACCGATAGAGACGCGCTGACGGATTCTGATCTAAGCTTTGTGTTTGGGGGGTTCCTTGGCAAAAACCCTGAAGAAGCCAAACTGCAGAAAGAGCAGAGACTTGATGGTGAAATTGAAGAGctcAAAGACGAAATTGAGAAGCTGGAAGACAAAGCTGAGTGTGCCAACACTGCTTTAAAAGTGGACTGGGAACGGTGGCACAGAAACATGCAAAGAGATATCAAATCTTCATTCCTGTACATGGCTGAAAGGAATGTTGACTATTATGAAAAGTGCCTTGCCATATGGGAGTCTTTCCTCGTTTCACATAAAAATGACCTTATTGCGGAGACAGGCAGAGAAGAGAATTGCTAGGATGGCCTCCAGCACCACAGCAACTGACCAAAGACGCATCCCCAGGTTACTTAAGGACATTTctactggatttttttttttttttttttctcatttattttatattgtaatattacaGATATGTTGGGAGAGATTTTTATAAATCCACCTCAGGGTATTCAACTGCCATGATGCATTTGATCAATATACTATTAGTTGCACATAGTGGGCCTTGTTCATAAATAATGGAACCCATAACTGCTTTATTAAAAGAAACGAAAAATCCAGTGTttaacatatacacacacggGATATTTCTATTGTTTAAGGTATAGACATTTTCaaggaattaaatatatattatatatttttcacaatttcacgaaatgcttttaatgaaaattcggatcatattttgaaaaaataaatataaagtaactggttaaatattctttaaaaatattcttcataaaataaaatgctaattgcaaaaaaaaaaagtaggtctcaaaacaaaaccaggtcagtgatttaattatttctgttgtacttTTAATCTAGTGATTTATTTGCCACTATTGATCTGTCCTTCTTTGCCAAAAGCTTTTTTTGATGCCATGAGGGGATTTTTCTCCTTGTTATCAGTGGTTCATAGACTTTTTTTNNNNNNNNNNTTTTTTTGTAATGACTTCCCAAGTGTGTGATGACCTGTGTTTGAAAAACTGATGTTATAAAATgacctgtaaaatatataagGGTGGCATTAAAGGGAATATTTAATGTGTTCCCCTAAGAATGTATCATGAACATCTTTCAGTTCACACTAAATTAGATGAAAACAGATCAATCGCATTAGAATATATTATTTGCCTAAAGACTCTGCTGCTTTCAAGGACTTCTCTATCAAAACATCCACCACTTGTTATGCATCTCATTACTTGCTGCTCGCCCCCAGCAGAGTATACAGTGTAACCACAATGAGAGAGTGGAAACCAATGCATCATTCGGGGGGTTGACGAATGGCATTAATTGTCCAGGAGAATGACTAAAACGTCCCAACGtaaaattatgaataacatagttcagcattttattataaatgtttttgaatatgaAACACCCAGAATATAGATGTTTTTCATGGTTGTACTAATAACCATATAATCAACCTATTACAGCCACATACTGCAGGAATGTGTATTCACATGTCATGCATTTTCCATTGTGGTGGAAACTCATGTATTCCTTCCCATTTGGCCCTTTCTGCAATGGCCATGTGTGCATATTCATCATCAGTGGAAGTAGAGCATGCCAGATTCCCAAAATAGGTTACTGACGTGACTTaatcacattaaatattgaactgCTTGCTTTAAACTACTTGGAGGCCTTCAATTgttgtatttgccagtatttCTAATTAGTGTTATATCTTTGCTTAGATGTGCCTCCTGTcgattataaaatgttaattcccGTGTCCCTAGAAGGTGACAGCATTCTGTAATAACATTCATTGGTTTATTATTGGAATTCGACACACTAAGGTATCAACAGCGATCTTTATAAATGGTTCATTATGGgctatatcaataaataaaatgtttgtttacaaatataaaatgtttttcttttgttctttcaatattttcagtgtgtaaattaaaaattgtgTGCTGAAGCATTTACTAGGATTACAAGGACCTAATCCCTACGTATGCAAATTAATATTCTAACAGACGAAGCTTGATTTTAAATGATGGGTAGATAGAGTGGGGCAGTGCATTCTAAGACCATCGATCAACG
>TU183041
cttttttttttttttNNTTTTTTTGTAATGACTTCCCAAGTGTGTGATGACCTGTGTTTGAAAAACTGATGTTATAAAATgacctgtaaaatatataagGGTGGCATTAAAGGGAATATTTAATGTGTTCCCCTAAGAATGTATCATGAACATCTTTCAGTTCACACTAAATTAGATGAAAACAGATCAATCGCATTAGAATATATTATTTGCCTAAAGACTCTGCTGCTTTCAAGGACTTCTCTATCAAAACATCCACCACTTGTTATGCATCTCATTACTTGCTGCTCGCCCCCAGCAGAGTATACAGTGTAACCACAATGAGAGAGTGGAAACCAATGCATCATTCGGGGGGTTGACGAATGGCATTAATTGTCCAGGAGAATGACTAAAACGTCCCAACGtaaaattatgaataacatagttcagcattttattataaatgtttttgaatatgaAACACCCAGAATATAGATGTTTTTCATGGTTGTACTAATAACCATATAATCAACCTATTACAGCCACATACTGCAGGAATGTGTATTCACATGTCATGCATTTTCCATTGTGGTGGAAACTCATGTATTCCTTCCCATTTGGCCCTTTCTGCAATGGCCATGTGTGCATATTCATCATCAGTGGAAGTAGAGCATGCCAGATTCCCAAAATAGGTTACTGACGTGACTTaatcacattaaatattgaactgCTTGCTTTAAACTACTTGGAGGCCTTCAATTgttgtatttgccagtatttCTAATTAGTGTTATATCTTTGCTTAGATGTGCCTCCTGTcgattataaaatgttaattcccGTGTCCCTAGAAGGTGACAGCATTCTGTAATAACATTCATTGGTTTATTATTGGAATTCGACACACTAAGGTATCAACAGCGATCTTTATAAATGGTTCATTATGGgctatatcaataaataaaatgtttgtttacaaat
>TU183044
aactttttttttttttttttttttTTTTTGTAATGACTTCCCAAGTGTGTGATGACCTGTGTTTGAAAAACTGATGTTATAAAATgacctgtaaaatatataagGGTGGCATTAAAGGGAATATTTAATGTGTTCCCCTAAGAATGTATCATGAACATCTTTCAGTTCACACTAAATTAGATGAAAACAGATCAATCGCATTAGAATATATTATTTGCCTAAAGACTCTGCTGCTTTCAAGGACTTCTCTATCAAAACATCCACCACTTGTTATGCATCTCATTACTTGCTGCTCGCCCCCAGCAGAGTATACAGTGTAACCACAATGAGAGAGTGGAAACCAATGCATCATTCGGGGGGTTGACGAATGGCATTAATTGTCCAGGAGAATGACTAAAACGTCCCAACGtaaaattatgaataacatagttcagcattttattataaatgtttttgaatatgaAACACCCAGAATATAGATGTTTTTCATGGTTGTACTAATAACCATATAATCAACCTATTACAGCCACATACTGCAGGAATGTGTATTCACATGTCATGCATTTTCCATTGTGGTGGAAACTCATGTATTCCTTCCCATTTGGCCCTTTCTGCAATGGCCATGTGTGCATATTCATCATCAGTGGAAGTAGAGCATGCCAGATTCCCAAAATAGGTTACTGACGTGACTTaatcacattaaatattgaactgCTTGCTTTAAACTACTTGGAGGCCTTCAATTgttgtatttgccagtatttCTAATTAGTGTTATATCTTTGCTTAGATGTGCCTCCTGTcgattataaaatgttaattcccGTGTCCCTAGAAGGTGACAGCATTCTGTAATAACATTCATTGGTTTATTATTGGAATTCGACACACTAAGGTATCAACAGCGATCTTTATAAATGGTTCATTATGGgctatatcaataaataaaatgtttgtttacaaat

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0001889 liver development biological_process
GO:0097153 cysteine-type endopeptidase activity involved in apoptotic process molecular_function

KEGG:

id description
K17921 SNX7_30; sorting nexin-7/30

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005111 True 3202 mRNA 0.41 9 15503082 15517652
TU183041 False 960 lncRNA 0.35 2 15503271 15520163
TU183044 False 965 lncRNA 0.35 2 15503271 15535145

Neighbor

gene id symbol gene type direction distance location
AMCG00005101 NA coding downstream 66112 15418575 ~ 15436970 (-)
AMCG00005107 NA coding downstream 133094 15359973 ~ 15369988 (-)
AMCG00005106 NA coding downstream 151616 15348635 ~ 15351466 (-)
AMCG00005109 NA coding downstream 169562 15311593 ~ 15333520 (-)
AMCG00005108 NA coding downstream 198261 15285703 ~ 15304821 (-)
AMCG00005112 ptbp2,ptbp2b,LOC107677766,LOC107718150,LOC107570490 coding upstream 257469 15792614 ~ 15814059 (-)
AMCG00005115 NA coding upstream 412383 15947528 ~ 15952291 (-)
AMCG00005113 hccs,LOC106942126,LOC106904910,LOC106519007 coding upstream 419319 15954464 ~ 15956072 (-)
AMCG00005123 NA coding upstream 508056 16043201 ~ 16045747 (-)
AMCG00005124 abcd3,LOC107739019,LOC107560648,LOC107657768 coding upstream 511334 16046479 ~ 16057475 (-)
G145441 NA non-coding downstream 236134 15261347 ~ 15266948 (-)
G145436 NA non-coding downstream 245418 15255889 ~ 15257664 (-)
G145434 NA non-coding downstream 248194 15253513 ~ 15254888 (-)
G145401 NA non-coding downstream 353490 15145798 ~ 15149592 (-)
G145387 NA non-coding downstream 397632 15105218 ~ 15105450 (-)
G145680 LOC101077364,LOC107383562,LOC104957225 non-coding upstream 839517 16374662 ~ 16375417 (-)
G145760 NA non-coding upstream 1429058 16964203 ~ 16965074 (-)
G145995 NA non-coding upstream 2489620 18024765 ~ 18025674 (-)
G146022 NA non-coding upstream 2762702 18297847 ~ 18298103 (-)
G146023 NA non-coding upstream 2816722 18351867 ~ 18352132 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 533840 14964414 ~ 14969242 (-)
G145046 NA other downstream 2166336 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 3154754 12344671 ~ 12348328 (-)
AMCG00005011 best4,LOC103396708 other downstream 3346704 12135378 ~ 12156378 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 6596488 8872885 ~ 8906594 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other upstream 423559 15958704 ~ 15978855 (-)
AMCG00005158 NA other upstream 2008001 17543146 ~ 17546332 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 3206739 18741884 ~ 18764298 (-)
AMCG00005214 NA other upstream 3477932 19013077 ~ 19024461 (-)
G146313 NA other upstream 4034914 19570059 ~ 19573318 (-)

Expression


Co-expression Network